ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes

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Didelot, Xavier; Wilson, Daniel J.;
  • Publisher: Figshare
  • Related identifiers: doi: 10.1371/journal.pcbi.1004041
  • Subject: Biological Sciences | ST 6 | recombination hotspots | Genomes Recombination | Efficient Inference | undescribed 310 kb chromosomal replacement | genome | likelihood inference | genomic sample | analyse hundreds | phylogenetic reconstruction | Staphylococcus aureus ST 582. ClonalFrameML

<div><p>Recombination is an important evolutionary force in bacteria, but it remains challenging to reconstruct the imports that occurred in the ancestry of a genomic sample. Here we present ClonalFrameML, which uses maximum likelihood inference to simultaneously detect... View more
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