RAxML and FastTree: Comparing Two Methods for Large-Scale Maximum Likelihood Phylogeny Estimation

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Liu, Kevin; Randal Linder, C.; Warnow, Tandy;
  • Publisher: Figshare
  • Related identifiers: doi: 10.1371/journal.pone.0027731
  • Subject: Evolutionary Biology | Biological Sciences | Information and Computing Sciences | Mathematics | raxml | comparing | methods | large-scale | phylogeny | estimation

<div><p>Statistical methods for phylogeny estimation, especially maximum likelihood (ML), offer high accuracy with excellent theoretical properties. However, RAxML, the current leading method for large-scale ML estimation, can require weeks or longer when used on datase... View more
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