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11 research outcomes, page 1 of 2
  • software . 2011
    English application/zip
    Authors:
    Colmsee, Christian; Flemming, Steffen; Klapperstück, Matthias; Lange, Matthias; Scholz, Uwe;
    Persistent Identifiers
    Publisher: e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben, Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
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  • software . 2017
    English
    Authors:
    Ulpinnis, Chris;
    Persistent Identifiers
    Publisher: e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben, Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany

    The published scripts are integrated in a pipeline which was developed at the IPK in the frame of a master thesis. The pipeline aims to perform a gene prediction in genomic data using additional information from RNA-seq data. The process is divided into four main steps ...

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  • software . 2016
    English
    Authors:
    Chen, Jinbo;
    Persistent Identifiers
    Publisher: e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben, Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany

    The query suggestion API enables a real-time, semantic query suggestion for keyword based query systems. It has been implemented as RESTful service and can easily be integrated into third-party applications. Compared to popular search frameworks, like Apache Lucene, the...

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  • software . 2016
    English
    Authors:
    Beier, Sebastian;
    Persistent Identifiers
    Publisher: e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben, Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany

    Tool for the removal of paired-end or mate-pair reads from a set of two Illumina FASTQ read files based on read length. Users can specify the minimal length of reads in base pairs that both reads of a pair need to have in order for this read pair to be kept, otherwise t...

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  • software . 2015
    English
    Authors:
    Schmutzer, Thomas;
    Persistent Identifiers
    Publisher: e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben, Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany

    The developed scripts (FASTQ_splitter.pl and VCF_SNP_matrix_construction.pl) were developed to assist data processing in the PreBreed Yield project. FASTQ_splitter.pl: The Perl script assists to synchronize read pairs after quality trimming. Synchronization is required ...

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  • software . 2017
    English
    Authors:
    Lueck, Stefanie;
    Persistent Identifiers
    Publisher: e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben, Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany

    The siFi (siRNA Finder) is for optimizing long double-stranded RNAi- target design and for the prediction of RNAi off-targets. It provides an intuitive graphical user interface, works in Microsoft Windows environment and can use custom sequence databases in standard FAS...

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  • software . 2014
    English
    Authors:
    Colmsee, Christian;
    Persistent Identifiers
    Publisher: e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben, Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany

    Hadoop pipeline source code for a semantic based recommendation system in life science

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  • software . 2017
    English
    Authors:
    Douchkov, Dimitar;
    Persistent Identifiers
    Publisher: e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben, Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany

    The file contains nucleotide sequences of the synthetic DNA constructs set used for the siFi software calibration.

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  • software . 2012
    English
    Authors:
    Lange, Matthias; Mehlhorn, Hendrik; Scholz, Uwe; Schreiber, Falk;
    Persistent Identifiers
    Publisher: e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben, Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
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  • software . 2016
    English
    Authors:
    IBSC;
    Persistent Identifiers
    Publisher: e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben, Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany

    This folder contains the Unix shell (ZSH) and R source code that was used for reading in datasets providing positional information, constructing a BAC overlap graph and a HiC map, and combining this information to derive pseudomolecules sequences. See comments in the so...

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11 research outcomes, page 1 of 2