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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Martin J. D. Champion; John M. Dyke; William Levason; Mark E. Light; +5 Authors

    Unprecedented homoleptic octathioether macrocyclic coordination to Na(+) in [Na([24]aneS8)](+) has been achieved by using Na[B{3,5-(CF3)2-C6H3}4] as a source of "naked" Na(+) ions and confirmed crystallographically, with d(Na-S) = 2.9561(15)-3.0524(15) Å. Density functional theory calculations show that there is electron transfer from the S 3p and C 2p valence orbitals of the ligand to the 3s and 3p orbitals of the Na(+) ion upon complexation.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ e-Prints Sotonarrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    e-Prints Soton
    Article . 2015
    Data sources: e-Prints Soton
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Gordon N. Inglis; Margaret E. Collinson; Walter Riegel; Volker Wilde; +8 Authors

    Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are increasingly used to reconstruct mean annual air temperature (MAAT) during the early Paleogene. However, the application of this proxy in coal deposits is limited and brGDGTs have only been detected in immature coals (i.e. lignites). Using samples recovered from Schöningen, Germany (∼48°N palaeolatitude), we provide the first detailed study into the occurrence and distribution of brGDGTs through a sequence of early Eocene lignites and associated interbeds. BrGDGTs are abundant and present in every sample. In comparison to modern studies, changes in vegetation type do not appear to significantly impact brGDGT distributions; however, there are subtle differences between lignites – representing peat-forming environments – and siliciclastic nearshore marine interbed depositional environments. Using the most recent brGDGT temperature calibration (MATmr) developed for soils, we generate the first continental temperature record from central-western continental Europe through the early Eocene. Lignite-derived MAAT estimates range from 23 to 26 °C while those derived from the nearshore marine interbeds exceed 20 °C. These estimates are consistent with other mid-latitude environments and model simulations, indicating enhanced mid-latitude, early Eocene warmth. In the basal part of the section studied, warming is recorded in both the lignites (∼2 °C) and nearshore marine interbeds (∼2–3 °C). This culminates in a long-term temperature maximum, likely including the Early Eocene Climatic Optimum (EECO). Although this long-term warming trend is relatively well established in the marine realm, it has rarely been shown in terrestrial settings. Using a suite of model simulations we show that the magnitude of warming at Schöningen is broadly consistent with a doubling of CO2, in agreement with late Paleocene and early Eocene pCO2 estimates.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Fachrepositorium Leb...arrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    e-Prints Soton
    Article . 2017
    Data sources: e-Prints Soton
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Stephen A. Burrows; Ivan Korotkin; Stoyan K. Smoukov; Edo S. Boek; +1 Authors

    Accurate prediction of alkane phase transitions involving solids is needed to prevent catastrophic pipeline blockages, improve lubrication formulations, smart insulation, and energy storage, as well as bring fundamental understanding to processes such as artificial morphogenesis. However, simulation of these transitions is challenging and therefore often omitted in force field development. Here, we perform a series of benchmarks on seven representative molecular dynamics models (TraPPE, PYS, CHARMM36, L-OPLS, COMPASS, Williams, and the newly optimized Williams 7B), comparing with experimental data for liquid properties, liquid-solid, and solid-solid phase transitions of two prototypical alkanes, n-pentadecane (C15) and n-hexadecane (C16). We find that existing models overestimate the melting points by up to 34 K, with PYS and Williams 7B yielding the most accurate results deviating only 2 and 3 K from the experiment. We specially design order parameters to identify crystal-rotator phase transitions in alkanes. United-atom models could only produce a rotator phase with complete rotational disorder, whereas all-atom models using a 12-6 Lennard-Jones potential show no rotator phase even when superheated above the melting point. In contrast, Williams (Buckingham potential) and COMPASS (9-6 Lennard-Jones) reproduce the crystal-to-rotator phase transition, with the optimized Williams 7B model having the most accurate crystal-rotator transition temperature of C15.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ e-Prints Sotonarrow_drop_down
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    e-Prints Soton
    Article . 2021
    Data sources: e-Prints Soton
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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    Takaki Yamada; Miquel Massot-Campos; Adam Prügel-Bennett; Stefan B. Williams; +2 Authors

    Camera equipped Autonomous Underwater Vehicles (AUVs) are now routinely used in seafloor surveys. Obtaining effective representations from the images they collect can enable perception-aware robotic exploration such as information-gain-guided path planning and target-driven visual navigation. This letter develops a novel self-supervised representation learning method for seafloor images collected by AUVs. The method allows deep-learning convolutional autoencoders to leverage multiple sources of metadata to regularise their learning, prioritising features observed in images that can be correlated with patterns in their metadata. The impact of the proposed regularisation is examined on a dataset consisting of more than 30 k colour seafloor images gathered by an AUV off the coast of Tasmania. The metadata used to regularise learning in this dataset consists of the horizontal location and depth of the observed seafloor. The results show that including metadata in self-supervised representation learning can increase image classification accuracy by up to 15% and never degrades learning performance. We show how effective representation learning can be applied to achieve class balanced representative image identification for summarised understanding of imbalanced class distributions in an unsupervised way.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ e-Prints Sotonarrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    e-Prints Soton
    Article . 2021
    Data sources: e-Prints Soton
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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    Vinod Kumar Puthiyapura; Dan J. L. Brett; Andrea E. Russell; Wen-Feng Lin; +1 Authors

    Pt and PtSn catalysts were studied for n-butanol electro-oxidation at various temperatures. PtSn showed a higher activity towards butanol electro-oxidation compared to Pt in acidic media. The onset potential for n-butanol oxidation on PtSn is similar to 520 mV lower than that found on Pt, and significantly lower activation energy was found for PtSn compared with that for Pt.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ e-Prints Sotonarrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    e-Prints Soton
    Article . 2015
    Data sources: e-Prints Soton
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Chemical Communications
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    Chemical Communications
    Article . 2015
    Data sources: Crossref
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    Matthew P. Humphreys; Eric P. Achterberg; Alex M. Griffiths; Alison McDonald; +1 Authors

    The stable carbon isotope composition of dissolved inorganic carbon (δ13CDIC) in seawater was measured in a batch process for 552 samples collected during two cruises in the northeastern Atlantic and Nordic Seas from June to August 2012. One cruise was part of the UK Ocean Acidification research programme, and the other was a repeat hydrographic transect of the Extended Ellett Line. In combination with measurements made of other variables on these and other cruises, these data can be used to constrain the anthropogenic component of dissolved inorganic carbon (DIC) in the interior ocean, and to help to determine the influence of biological carbon uptake on surface ocean carbonate chemistry. The measurements have been processed, quality-controlled and submitted to an in-preparation global compilation of seawater δ13CDIC data, and are available from the British Oceanographic Data Centre. The observed δ13CDIC values fall in a range from −0.58 to +2.37 ‰, relative to the Vienna Pee Dee Belemnite standard. The mean of the absolute differences between samples collected in duplicate in the same container type during both cruises and measured consecutively is 0.10 ‰, which corresponds to a 1σ uncertainty of 0.09 ‰, and which is within the range reported by other published studies of this kind. A crossover analysis was performed with nearby historical δ13CDIC data, indicating that any systematic offsets between our measurements and previously published results are negligible. Data doi:10.5285/09760a3a-c2b5-250b-e053-6c86abc037c0 (northeastern Atlantic), doi:10.5285/09511dd0-51db-0e21-e053-6c86abc09b95 (Nordic Seas).

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Enlightenarrow_drop_down
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    OceanRep
    Article . 2015
    Data sources: OceanRep
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    Earth System Science Data (ESSD)
    Article . Preprint
    License: cc-by
    Data sources: UnpayWall
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    e-Prints Soton
    Article . 2015
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Earth System Science Data (ESSD)
    Other literature type . 2018
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    Anthony K. Edmonds; Catherine S. Oakes; Storm Hassell-Hart; Didier Bruyère; +6 Authors

    ISOX-DUAL is a dual inhibitor of CBP/p300 (IC50 = 0.65 μM) and BRD4 (IC50 = 1.5 μM) bromodomains, and a useful chemical probe for epigenetic research. Aspects of the published synthetic route to this compound and its analogues are small-scale, poor-yielding or simply unamenable to scale-up without optimization. Herein we describe the development of a refined synthesis that circumvents the challenges of the original report, with notable improvements to several of the key synthetic transformations. Moreover, a general Suzuki Miyaura protocol for the late stage installation of alternative dimethyl-isoxazole acetyl-lysine (KAc) binding motifs is presented.

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    e-Prints Soton
    Article . 2022
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    William Levason; David Pugh; Gillian Reid;

    Eight imidazolium-based salts with the weakly-coordinating anions [BArF]− and [Al(OtC4F9)4]− ([BArF]− = tetrakis{3,5-bis(trifluoromethyl)phenyl}borate) have been synthesized. Characterization by 1H NMR spectroscopy shows that the salts are fully dissociated in solution. Six examples have been further characterized by X-ray crystallography, revealing that weak hydrogen bonds do occur in the solid phase between the imidazolium cations and weakly coordinating anions. Comparison with the bulky [IDiPPH] imidazolium cation (IDiPPH = 1,3-bis{2,6-bis(diisopropyl)phenyl}imidazolium) shows that large steric bulk close to the imidazolium protons can preclude hydrogen bonds from forming. Differential scanning calorimetry of the salts reveal that all are thermally stable up to 200 °C which renders them as potentially suitable background electrolytes for electrochemical processes which take place at elevated temperatures.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ New Journal of Chemi...arrow_drop_down
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    e-Prints Soton
    Article . 2017
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    New Journal of Chemistry
    Article . 2017
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    Elizaveta A. Suturina; Ilya Kuprov;

    This paper presents a detailed analysis of the pseudocontact shift (PCS) field induced by a mobile spin label that is viewed as a probability density distribution with an associated effective magnetic susceptibility anisotropy. It is demonstrated that non-spherically-symmetric density can lead to significant deviations from the commonly used point dipole approximation for PCS. Analytical and numerical solutions are presented for the general partial differential equation that describes the non-point case. It is also demonstrated that it is possible, with some reasonable approximations, to reconstruct paramagnetic centre probability distributions from the experimental PCS data. in press

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    Physical Chemistry Chemical Physics
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    e-Prints Soton
    Article . 2016
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    Iwona Gajda; John Greenman; Chris Melhuish; Ioannis Ieropoulos;

    AbstractThis paper describes the potential for algal biomass production in conjunction with wastewater treatment and power generation within a fully biotic Microbial Fuel Cell (MFC). The anaerobic biofilm in the anodic half-cell is generating current, whereas the phototrophic biofilm on the cathode is providing the oxygen for the Oxygen Reduction Reaction (ORR) and forming biomass. The MFC is producing electricity with simultaneous biomass regeneration in the cathodic half-cell, which is dependent on the nutrient value of the anodic feedstock. Growth of algal biomass in the cathode was monitored, assessed and compared against the MFC power production (charge transfer), during this process. MFC generation of electricity activated the cation crossover for the formation of biomass, which has been harvested and reused as energy source in a closed loop system. It can be concluded that the nutrient reclamation and assimilation into new biomass increases the energy efficiency. This work is presenting a simple and self-sustainable MFC operation with minimal dependency on chemicals and an energy generation system utilising waste products and maximising energy turnover through an additional biomass recovery.

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    e-Prints Soton
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    Martin J. D. Champion; John M. Dyke; William Levason; Mark E. Light; +5 Authors

    Unprecedented homoleptic octathioether macrocyclic coordination to Na(+) in [Na([24]aneS8)](+) has been achieved by using Na[B{3,5-(CF3)2-C6H3}4] as a source of "naked" Na(+) ions and confirmed crystallographically, with d(Na-S) = 2.9561(15)-3.0524(15) Å. Density functional theory calculations show that there is electron transfer from the S 3p and C 2p valence orbitals of the ligand to the 3s and 3p orbitals of the Na(+) ion upon complexation.

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    e-Prints Soton
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    Gordon N. Inglis; Margaret E. Collinson; Walter Riegel; Volker Wilde; +8 Authors

    Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are increasingly used to reconstruct mean annual air temperature (MAAT) during the early Paleogene. However, the application of this proxy in coal deposits is limited and brGDGTs have only been detected in immature coals (i.e. lignites). Using samples recovered from Schöningen, Germany (∼48°N palaeolatitude), we provide the first detailed study into the occurrence and distribution of brGDGTs through a sequence of early Eocene lignites and associated interbeds. BrGDGTs are abundant and present in every sample. In comparison to modern studies, changes in vegetation type do not appear to significantly impact brGDGT distributions; however, there are subtle differences between lignites – representing peat-forming environments – and siliciclastic nearshore marine interbed depositional environments. Using the most recent brGDGT temperature calibration (MATmr) developed for soils, we generate the first continental temperature record from central-western continental Europe through the early Eocene. Lignite-derived MAAT estimates range from 23 to 26 °C while those derived from the nearshore marine interbeds exceed 20 °C. These estimates are consistent with other mid-latitude environments and model simulations, indicating enhanced mid-latitude, early Eocene warmth. In the basal part of the section studied, warming is recorded in both the lignites (∼2 °C) and nearshore marine interbeds (∼2–3 °C). This culminates in a long-term temperature maximum, likely including the Early Eocene Climatic Optimum (EECO). Although this long-term warming trend is relatively well established in the marine realm, it has rarely been shown in terrestrial settings. Using a suite of model simulations we show that the magnitude of warming at Schöningen is broadly consistent with a doubling of CO2, in agreement with late Paleocene and early Eocene pCO2 estimates.

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    e-Prints Soton
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    Stephen A. Burrows; Ivan Korotkin; Stoyan K. Smoukov; Edo S. Boek; +1 Authors

    Accurate prediction of alkane phase transitions involving solids is needed to prevent catastrophic pipeline blockages, improve lubrication formulations, smart insulation, and energy storage, as well as bring fundamental understanding to processes such as artificial morphogenesis. However, simulation of these transitions is challenging and therefore often omitted in force field development. Here, we perform a series of benchmarks on seven representative molecular dynamics models (TraPPE, PYS, CHARMM36, L-OPLS, COMPASS, Williams, and the newly optimized Williams 7B), comparing with experimental data for liquid properties, liquid-solid, and solid-solid phase transitions of two prototypical alkanes, n-pentadecane (C15) and n-hexadecane (C16). We find that existing models overestimate the melting points by up to 34 K, with PYS and Williams 7B yielding the most accurate results deviating only 2 and 3 K from the experiment. We specially design order parameters to identify crystal-rotator phase transitions in alkanes. United-atom models could only produce a rotator phase with complete rotational disorder, whereas all-atom models using a 12-6 Lennard-Jones potential show no rotator phase even when superheated above the melting point. In contrast, Williams (Buckingham potential) and COMPASS (9-6 Lennard-Jones) reproduce the crystal-to-rotator phase transition, with the optimized Williams 7B model having the most accurate crystal-rotator transition temperature of C15.

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    Article . 2021
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    Takaki Yamada; Miquel Massot-Campos; Adam Prügel-Bennett; Stefan B. Williams; +2 Authors

    Camera equipped Autonomous Underwater Vehicles (AUVs) are now routinely used in seafloor surveys. Obtaining effective representations from the images they collect can enable perception-aware robotic exploration such as information-gain-guided path planning and target-driven visual navigation. This letter develops a novel self-supervised representation learning method for seafloor images collected by AUVs. The method allows deep-learning convolutional autoencoders to leverage multiple sources of metadata to regularise their learning, prioritising features observed in images that can be correlated with patterns in their metadata. The impact of the proposed regularisation is examined on a dataset consisting of more than 30 k colour seafloor images gathered by an AUV off the coast of Tasmania. The metadata used to regularise learning in this dataset consists of the horizontal location and depth of the observed seafloor. The results show that including metadata in self-supervised representation learning can increase image classification accuracy by up to 15% and never degrades learning performance. We show how effective representation learning can be applied to achieve class balanced representative image identification for summarised understanding of imbalanced class distributions in an unsupervised way.

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    Vinod Kumar Puthiyapura; Dan J. L. Brett; Andrea E. Russell; Wen-Feng Lin; +1 Authors

    Pt and PtSn catalysts were studied for n-butanol electro-oxidation at various temperatures. PtSn showed a higher activity towards butanol electro-oxidation compared to Pt in acidic media. The onset potential for n-butanol oxidation on PtSn is similar to 520 mV lower than that found on Pt, and significantly lower activation energy was found for PtSn compared with that for Pt.

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    Chemical Communications
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    Article . 2015
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    Matthew P. Humphreys; Eric P. Achterberg; Alex M. Griffiths; Alison McDonald; +1 Authors

    The stable carbon isotope composition of dissolved inorganic carbon (δ13CDIC) in seawater was measured in a batch process for 552 samples collected during two cruises in the northeastern Atlantic and Nordic Seas from June to August 2012. One cruise was part of the UK Ocean Acidification research programme, and the other was a repeat hydrographic transect of the Extended Ellett Line. In combination with measurements made of other variables on these and other cruises, these data can be used to constrain the anthropogenic component of dissolved inorganic carbon (DIC) in the interior ocean, and to help to determine the influence of biological carbon uptake on surface ocean carbonate chemistry. The measurements have been processed, quality-controlled and submitted to an in-preparation global compilation of seawater δ13CDIC data, and are available from the British Oceanographic Data Centre. The observed δ13CDIC values fall in a range from −0.58 to +2.37 ‰, relative to the Vienna Pee Dee Belemnite standard. The mean of the absolute differences between samples collected in duplicate in the same container type during both cruises and measured consecutively is 0.10 ‰, which corresponds to a 1σ uncertainty of 0.09 ‰, and which is within the range reported by other published studies of this kind. A crossover analysis was performed with nearby historical δ13CDIC data, indicating that any systematic offsets between our measurements and previously published results are negligible. Data doi:10.5285/09760a3a-c2b5-250b-e053-6c86abc037c0 (northeastern Atlantic), doi:10.5285/09511dd0-51db-0e21-e053-6c86abc09b95 (Nordic Seas).

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    Earth System Science Data (ESSD)
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    e-Prints Soton
    Article . 2015
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    Earth System Science Data (ESSD)
    Other literature type . 2018
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    Anthony K. Edmonds; Catherine S. Oakes; Storm Hassell-Hart; Didier Bruyère; +6 Authors

    ISOX-DUAL is a dual inhibitor of CBP/p300 (IC50 = 0.65 μM) and BRD4 (IC50 = 1.5 μM) bromodomains, and a useful chemical probe for epigenetic research. Aspects of the published synthetic route to this compound and its analogues are small-scale, poor-yielding or simply unamenable to scale-up without optimization. Herein we describe the development of a refined synthesis that circumvents the challenges of the original report, with notable improvements to several of the key synthetic transformations. Moreover, a general Suzuki Miyaura protocol for the late stage installation of alternative dimethyl-isoxazole acetyl-lysine (KAc) binding motifs is presented.

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    e-Prints Soton
    Article . 2022
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    William Levason; David Pugh; Gillian Reid;

    Eight imidazolium-based salts with the weakly-coordinating anions [BArF]− and [Al(OtC4F9)4]− ([BArF]− = tetrakis{3,5-bis(trifluoromethyl)phenyl}borate) have been synthesized. Characterization by 1H NMR spectroscopy shows that the salts are fully dissociated in solution. Six examples have been further characterized by X-ray crystallography, revealing that weak hydrogen bonds do occur in the solid phase between the imidazolium cations and weakly coordinating anions. Comparison with the bulky [IDiPPH] imidazolium cation (IDiPPH = 1,3-bis{2,6-bis(diisopropyl)phenyl}imidazolium) shows that large steric bulk close to the imidazolium protons can preclude hydrogen bonds from forming. Differential scanning calorimetry of the salts reveal that all are thermally stable up to 200 °C which renders them as potentially suitable background electrolytes for electrochemical processes which take place at elevated temperatures.

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    e-Prints Soton
    Article . 2017
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    New Journal of Chemistry
    Article . 2017
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    Elizaveta A. Suturina; Ilya Kuprov;

    This paper presents a detailed analysis of the pseudocontact shift (PCS) field induced by a mobile spin label that is viewed as a probability density distribution with an associated effective magnetic susceptibility anisotropy. It is demonstrated that non-spherically-symmetric density can lead to significant deviations from the commonly used point dipole approximation for PCS. Analytical and numerical solutions are presented for the general partial differential equation that describes the non-point case. It is also demonstrated that it is possible, with some reasonable approximations, to reconstruct paramagnetic centre probability distributions from the experimental PCS data. in press

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    Physical Chemistry Chemical Physics
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    e-Prints Soton
    Article . 2016
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    Iwona Gajda; John Greenman; Chris Melhuish; Ioannis Ieropoulos;

    AbstractThis paper describes the potential for algal biomass production in conjunction with wastewater treatment and power generation within a fully biotic Microbial Fuel Cell (MFC). The anaerobic biofilm in the anodic half-cell is generating current, whereas the phototrophic biofilm on the cathode is providing the oxygen for the Oxygen Reduction Reaction (ORR) and forming biomass. The MFC is producing electricity with simultaneous biomass regeneration in the cathodic half-cell, which is dependent on the nutrient value of the anodic feedstock. Growth of algal biomass in the cathode was monitored, assessed and compared against the MFC power production (charge transfer), during this process. MFC generation of electricity activated the cation crossover for the formation of biomass, which has been harvested and reused as energy source in a closed loop system. It can be concluded that the nutrient reclamation and assimilation into new biomass increases the energy efficiency. This work is presenting a simple and self-sustainable MFC operation with minimal dependency on chemicals and an energy generation system utilising waste products and maximising energy turnover through an additional biomass recovery.

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    e-Prints Soton
    Article . 2015
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