61 Research products

Research data
2014-2023
Canadian Institutes of Health Research
Aurora Universities Network

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Research data supporting "Common variation in genes encoding small GTPases and ovarian cancer risk": GTPases candidate gene SNP genotypes
Research datakeyboard_double_arrow_right Dataset 2018Embargo end date: 08 Mar 2018 United Kingdom Apollo - University of Cambridge Repository NIH | USC COMPREHENSIVE CANCER ..., NIH | GENETIC EPIDEMIOLOGY OF O..., NIH | Core--Tissue Banking and ...
Authors: Pharoah, PDP;
Pharoah, PDP;
doi: 10.17863/cam.20843
doi: 10.17863/cam.20843
Genotype data and related phenotype data for Ovarian Cancer Association Consortium project investigating common variantion in GTPAse genes and ovarian cancer risk
Apolloarrow_drop_down
Apollo
Dataset . 2018
License: https://creativecommons.org/licenses/by/4.0/legalcode
Data sources: Datacite
Apollo
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Data sources: Apollo
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Apollo
Dataset . 2018
License: https://creativecommons.org/licenses/by/4.0/legalcode
Data sources: Datacite
Apollo
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Additional file 5: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci
Research datakeyboard_double_arrow_right Dataset 2019 Netherlands figshare NWO | BBMRI-NL, CIHR, AKA | Epigenetic pathways to ob...
Authors: Gupta, Richa; Dongen, Jenny; Fu, Yu; Abdellaoui, Abdel; +7 Authors
Gupta, Richa; Dongen, Jenny; Fu, Yu; Abdellaoui, Abdel; Tyndale, Rachel; Velagapudi, Vidya; Dorret Boomsma; Korhonen, Tellervo; Kaprio, Jaakko; Loukola, Anu; Ollikainen, Miina;
doi: 10.6084/m9.figshare.7551749 , 10.6084/m9.figshare.7551749.v1
doi: 10.6084/m9.figshare.7551749 , 10.6084/m9.figshare.7551749.v1
Table S3. Cis acting methylation quantitative trait loci in the 40 genes highlighted in the EWAS. (XLS 31 kb)
Vrije Universiteit A...arrow_drop_down
Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository
Dataset
Data sources: Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository
figshare
Dataset . 2019
License: https://creativecommons.org/licenses/by/4.0/legalcode
Data sources: Datacite
Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository
Dataset
Data sources: Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository
figshare
Dataset . 2019
License: https://creativecommons.org/licenses/by/4.0/legalcode
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Data sources: Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository
figshare
Dataset . 2019
License: https://creativecommons.org/licenses/by/4.0/legalcode
Data sources: Datacite
Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository
Dataset
Data sources: Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository
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Dataset . 2019
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Additional file 1: of No difference in renal injury and fibrosis between wild-type and NOD1/NOD2 double knockout mice with chronic kidney disease induced by ureteral obstruction
Research datakeyboard_double_arrow_right Image 2018figshare NWO | XCiDE: Crossing the Combu..., CIHR
Authors: Stroo, Ingrid; Diba Emal; Butter, Loes; Teske, Gwen; +5 Authors
Stroo, Ingrid; Diba Emal; Butter, Loes; Teske, Gwen; Claessen, Nike; Dessing, Mark; Girardin, Stephen; Florquin, Sandrine; Jaklien Leemans;
doi: 10.6084/m9.figshare.6077297.v1 , 10.6084/m9.figshare.6077297
doi: 10.6084/m9.figshare.6077297.v1 , 10.6084/m9.figshare.6077297
Figure S1. The genotype of NOD1/2 DKO mice. Genomic DNA from mice was amplified by PCR with specific primers to detect the disrupted sequences on a 1% agarose gel with a 100Â bp marker. First 5 bands are the KO mice and the last bands are the WT mice in A and B. NÂ =â 5/3 per group. (TIFF 12868 kb)
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figshare
Image . 2018
License: https://creativecommons.org/licenses/by/4.0/legalcode
Data sources: Datacite
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Image . 2018
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Image . 2018
License: https://creativecommons.org/licenses/by/4.0/legalcode
Data sources: Datacite
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Image . 2018
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Additional file 10: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci
Research datakeyboard_double_arrow_right Dataset 2019 Netherlands CIHR, AKA | CoE in Complex Disease Ge..., AKA | Genomic epidemiology of a...
Authors: Gupta, Richa; Dongen, Jenny; Fu, Yu; Abdellaoui, Abdel; +7 Authors
Gupta, Richa; Dongen, Jenny; Fu, Yu; Abdellaoui, Abdel; Tyndale, Rachel; Velagapudi, Vidya; Dorret Boomsma; Korhonen, Tellervo; Kaprio, Jaakko; Loukola, Anu; Ollikainen, Miina;
doi: 10.6084/m9.figshare.7551686.v1 , 10.6084/m9.figshare.7551686
doi: 10.6084/m9.figshare.7551686.v1 , 10.6084/m9.figshare.7551686
Table S7. CpG sites showing significant (FDR pâ
figshare; Vrije Univ...arrow_drop_down
figshare; Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository
Dataset . 2019
License: https://creativecommons.org/licenses/by/4.0/legalcode
Data sources: Datacite; Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository
Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository; figshare
Dataset . 2019
License: https://creativecommons.org/licenses/by/4.0/legalcode
Data sources: Datacite; Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository
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Dataset . 2019
License: https://creativecommons.org/licenses/by/4.0/legalcode
Data sources: Datacite; Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository
Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository; figshare
Dataset . 2019
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Data sources: Datacite; Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository
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Additional file 8: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci
Research datakeyboard_double_arrow_right Dataset 2019 Netherlands figshare AKA | Genomic epidemiology of a..., AKA | Epigenetic pathways to ob..., EC | GMI
Authors: Gupta, Richa; Dongen, Jenny; Fu, Yu; Abdellaoui, Abdel; +7 Authors
Gupta, Richa; Dongen, Jenny; Fu, Yu; Abdellaoui, Abdel; Tyndale, Rachel; Velagapudi, Vidya; Dorret Boomsma; Korhonen, Tellervo; Kaprio, Jaakko; Loukola, Anu; Ollikainen, Miina;
doi: 10.6084/m9.figshare.7551761.v1
doi: 10.6084/m9.figshare.7551761.v1
Table S5. Mediation analysis omnibus P values for the 19 meQTLs associated with serum cotinine levels. (XLS 33 kb)
Vrije Universiteit A...arrow_drop_down
Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository
Dataset
Data sources: Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository
figshare
Dataset . 2019
License: https://creativecommons.org/licenses/by/4.0/legalcode
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Dataset
Data sources: Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository
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Dataset . 2019
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Additional file 5: of Comparative genomics and biological characterization of sequential Pseudomonas aeruginosa isolates from persistent airways infection
Research datakeyboard_double_arrow_right Dataset 2015Figshare CIHR
Authors: Bianconi, Irene; Jeukens, Julie; Freschi, Luca; AlcalĂĄ-Franco, Beatriz; +7 Authors
Bianconi, Irene; Jeukens, Julie; Freschi, Luca; AlcalĂĄ-Franco, Beatriz; Facchini, Marcella; Boyle, Brian; Molinaro, Antonio; Kukavica-Ibrulj, Irena; TĂźmmler, Burkhard; Levesque, Roger; Bragonzi, Alessandra;
doi: 10.6084/m9.figshare.c.3633539_d5
doi: 10.6084/m9.figshare.c.3633539_d5
Non-synonymous SNPs between prototype strain PA14 and strains RP73, RP45 and RP1. (XLS 2195Â kb)
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Dataset . 2015
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Dataset . 2015
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Additional file 12: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci
Research datakeyboard_double_arrow_right Dataset 2019 Netherlands CIHR, AKA | CoE in Complex Disease Ge..., AKA | Genomic epidemiology of a...
Authors: Gupta, Richa; Dongen, Jenny; Fu, Yu; Abdellaoui, Abdel; +7 Authors
Gupta, Richa; Dongen, Jenny; Fu, Yu; Abdellaoui, Abdel; Tyndale, Rachel; Velagapudi, Vidya; Dorret Boomsma; Korhonen, Tellervo; Kaprio, Jaakko; Loukola, Anu; Ollikainen, Miina;
doi: 10.6084/m9.figshare.7551698.v1 , 10.6084/m9.figshare.7551698
doi: 10.6084/m9.figshare.7551698.v1 , 10.6084/m9.figshare.7551698
Table S9. Literature search results for smoking EWAS. (XLS 9 kb)
figshare; Vrije Univ...arrow_drop_down
figshare; Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository
Dataset . 2019
License: https://creativecommons.org/licenses/by/4.0/legalcode
Data sources: Datacite; Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository
Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository; figshare
Dataset . 2019
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Dataset . 2019
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Dataset . 2019
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CCDC 1948849: Experimental Crystal Structure Determination
Research datakeyboard_double_arrow_right Dataset 2020 English Cambridge Crystallographic Data Centre NIH | Liver Pathobiology and Ge..., NSERC, NIH | Microbiome-Targeted Probe...
Authors: Dvořák, Zdeněk; Kopp, Felix; Costello, Cait M.; Kemp, Jazmin S.; +38 Authors
Dvořák, Zdeněk; Kopp, Felix; Costello, Cait M.; Kemp, Jazmin S.; Li, Hao; Vrzalová, Aneta; Štěpánková, Martina; Bartoňková, Iveta; Jiskrová, Eva; Poulíková, Karolína; Vyhlídalová, Barbora; Nordstroem, Lars U.; Karunaratne, Chamini V.; Ranhotra, Harmit S.; Mun, Kyu Shik; Naren, Anjaparavanda P.; Murray, Iain A.; Perdew, Gary H.; Brtko, Julius; Toporova, Lucia; Schön, Arne; Wallace, William G.; Walton, William G.; Redinbo, Matthew R.; Sun, Katherine; Beck, Amanda; Kortagere, Sandhya; Neary, Michelle C.; Chandran, Aneesh; Vishveshwara, Saraswathi; Cavalluzzi, Maria M.; Lentini, Giovanni; Cui, Julia Yue; Gu, Haiwei; March, John C.; Chatterjee, Shirshendu; Matson, Adam; Wright, Dennis; Flannigan, Kyle L.; Hirota, Simon A.; Sartor, Ryan Balfour; Mani, Sridhar;
doi: 10.5517/ccdc.csd.cc23dy3l
doi: 10.5517/ccdc.csd.cc23dy3l
Related Article: Zdeněk Dvořák, Felix Kopp, Cait M. Costello, Jazmin S. Kemp, Hao Li, Aneta Vrzalová, Martina Štěpánková, Iveta Bartoňková, Eva Jiskrová, Karolína Poulíková, Barbora Vyhlídalová, Lars U. Nordstroem, Chamini V. Karunaratne, Harmit S. Ranhotra, Kyu Shik Mun, Anjaparavanda P. Naren, Iain A. Murray, Gary H. Perdew, Julius Brtko, Lucia Toporova, Arne Schön, William G. Wallace, William G. Walton, Matthew R. Redinbo, Katherine Sun, Amanda Beck, Sandhya Kortagere, Michelle C. Neary, Aneesh Chandran, Saraswathi Vishveshwara, Maria M. Cavalluzzi, Giovanni Lentini, Julia Yue Cui, Haiwei Gu, John C. March, Shirshendu Chatterjee, Adam Matson, Dennis Wright, Kyle L. Flannigan, Simon A. Hirota, Ryan Balfour Sartor, Sridhar Mani|2020|EMBO Mol. Med.|12||doi:10.15252/emmm.201911621 An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
The Cambridge Struct...arrow_drop_down
The Cambridge Structural Database
Dataset . 2020
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Additional file 3 of The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry
Research datakeyboard_double_arrow_right Dataset 2022 Netherlands ARC | Discovery Projects - Gran..., CIHR, EC | NaToxAq
Authors: Mohammed Taha, Hiba; Aalizadeh, Reza; Alygizakis, Nikiforos; Antignac, Jean-Philippe; +93 Authors
Mohammed Taha, Hiba; Aalizadeh, Reza; Alygizakis, Nikiforos; Antignac, Jean-Philippe; Arp, Hans Peter H.; Bade, Richard; Baker, Nancy; Belova, Lidia; Bijlsma, Lubertus; Bolton, Evan E.; Brack, Werner; Celma, Alberto; Chen, Wen-Ling; Cheng, Tiejun; Chirsir, Parviel; Čirka, Ľuboš; D’Agostino, Lisa A.; Djoumbou Feunang, Yannick; Dulio, Valeria; Fischer, Stellan; Gago-Ferrero, Pablo; Galani, Aikaterini; Geueke, Birgit; Głowacka, Natalia; Glüge, Juliane; Groh, Ksenia; Grosse, Sylvia; Haglund, Peter; Hakkinen, Pertti J.; Hale, Sarah E.; Hernandez, Felix; Janssen, Elisabeth M.-L.; Jonkers, Tim; Kiefer, Karin; Kirchner, Michal; Koschorreck, Jan; Krauss, Martin; Krier, Jessy; Lamoree, Marja H.; Letzel, Marion; Letzel, Thomas; Li, Qingliang; Little, James; Liu, Yanna; Lunderberg, David M.; Martin, Jonathan W.; McEachran, Andrew D.; McLean, John A.; Meier, Christiane; Meijer, Jeroen; Menger, Frank; Merino, Carla; Muncke, Jane; Muschket, Matthias; Neumann, Michael; Neveu, Vanessa; Ng, Kelsey; Oberacher, Herbert; O’Brien, Jake; Oswald, Peter; Oswaldova, Martina; Picache, Jaqueline A.; Postigo, Cristina; Ramirez, Noelia; Reemtsma, Thorsten; Renaud, Justin; Rostkowski, Pawel; Rüdel, Heinz; Salek, Reza M.; Samanipour, Saer; Scheringer, Martin; Schliebner, Ivo; Schulz, Wolfgang; Schulze, Tobias; Sengl, Manfred; Shoemaker, Benjamin A.; Sims, Kerry; Singer, Heinz; Singh, Randolph R.; Sumarah, Mark; Thiessen, Paul A.; Thomas, Kevin V.; Torres, Sonia; Trier, Xenia; van Wezel, Annemarie P.; Vermeulen, Roel C. H.; Vlaanderen, Jelle J.; von der Ohe, Peter C.; Wang, Zhanyun; Williams, Antony J.; Willighagen, Egon L.; Wishart, David S.; Zhang, Jian; Thomaidis, Nikolaos S.; Hollender, Juliane; Slobodnik, Jaroslav; Schymanski, Emma L.;
doi: 10.6084/m9.figshare.21382490.v1 , 10.6084/m9.figshare.21382490
doi: 10.6084/m9.figshare.21382490.v1 , 10.6084/m9.figshare.21382490
Additional file 3: Summary of Zenodo view and download statistics, plus citations (CSV format) as of 28 April 2022 [235].
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nmr structure of urotensin peptide asp-c[cys-phe-trp-(n-me)lys-tyr- cys]-val in sds solution
Research datakeyboard_double_arrow_right Bioentity 2019 NSERC, CIHR
Authors: D.Brancaccio; A.Carotenuto; F.Merlino; E.Billard; +12 Authors
D.Brancaccio; A.Carotenuto; F.Merlino; E.Billard; A.M.Yousif; S.Di Maro; L.Abate; R.Bellavita; R.D'emmanuele Di Villa Bianca; P.Santicioli; L.Marinelli; E.Novellino; T.E.Hebert; W.D.Lubell; D.Chatenet; P.Grieco;
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Research data supporting "Common variation in genes encoding small GTPases and ovarian cancer risk": GTPases candidate gene SNP genotypes
Research datakeyboard_double_arrow_right Dataset 2018Embargo end date: 08 Mar 2018 United Kingdom Apollo - University of Cambridge Repository NIH | USC COMPREHENSIVE CANCER ..., NIH | GENETIC EPIDEMIOLOGY OF O..., NIH | Core--Tissue Banking and ...
Authors: Pharoah, PDP;
Pharoah, PDP;
doi: 10.17863/cam.20843
doi: 10.17863/cam.20843
Genotype data and related phenotype data for Ovarian Cancer Association Consortium project investigating common variantion in GTPAse genes and ovarian cancer risk
Apolloarrow_drop_down
Apollo
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Additional file 5: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci
Research datakeyboard_double_arrow_right Dataset 2019 Netherlands figshare NWO | BBMRI-NL, CIHR, AKA | Epigenetic pathways to ob...
Authors: Gupta, Richa; Dongen, Jenny; Fu, Yu; Abdellaoui, Abdel; +7 Authors
Gupta, Richa; Dongen, Jenny; Fu, Yu; Abdellaoui, Abdel; Tyndale, Rachel; Velagapudi, Vidya; Dorret Boomsma; Korhonen, Tellervo; Kaprio, Jaakko; Loukola, Anu; Ollikainen, Miina;
doi: 10.6084/m9.figshare.7551749 , 10.6084/m9.figshare.7551749.v1
doi: 10.6084/m9.figshare.7551749 , 10.6084/m9.figshare.7551749.v1
Table S3. Cis acting methylation quantitative trait loci in the 40 genes highlighted in the EWAS. (XLS 31 kb)
Vrije Universiteit A...arrow_drop_down
Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository
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Dataset . 2019
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Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository
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Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository
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Additional file 1: of No difference in renal injury and fibrosis between wild-type and NOD1/NOD2 double knockout mice with chronic kidney disease induced by ureteral obstruction
Research datakeyboard_double_arrow_right Image 2018figshare NWO | XCiDE: Crossing the Combu..., CIHR
Authors: Stroo, Ingrid; Diba Emal; Butter, Loes; Teske, Gwen; +5 Authors
Stroo, Ingrid; Diba Emal; Butter, Loes; Teske, Gwen; Claessen, Nike; Dessing, Mark; Girardin, Stephen; Florquin, Sandrine; Jaklien Leemans;
doi: 10.6084/m9.figshare.6077297.v1 , 10.6084/m9.figshare.6077297
doi: 10.6084/m9.figshare.6077297.v1 , 10.6084/m9.figshare.6077297
Figure S1. The genotype of NOD1/2 DKO mice. Genomic DNA from mice was amplified by PCR with specific primers to detect the disrupted sequences on a 1% agarose gel with a 100Â bp marker. First 5 bands are the KO mice and the last bands are the WT mice in A and B. NÂ =â 5/3 per group. (TIFF 12868 kb)
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Additional file 10: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci
Research datakeyboard_double_arrow_right Dataset 2019 Netherlands CIHR, AKA | CoE in Complex Disease Ge..., AKA | Genomic epidemiology of a...
Authors: Gupta, Richa; Dongen, Jenny; Fu, Yu; Abdellaoui, Abdel; +7 Authors
Gupta, Richa; Dongen, Jenny; Fu, Yu; Abdellaoui, Abdel; Tyndale, Rachel; Velagapudi, Vidya; Dorret Boomsma; Korhonen, Tellervo; Kaprio, Jaakko; Loukola, Anu; Ollikainen, Miina;
doi: 10.6084/m9.figshare.7551686.v1 , 10.6084/m9.figshare.7551686
doi: 10.6084/m9.figshare.7551686.v1 , 10.6084/m9.figshare.7551686
Table S7. CpG sites showing significant (FDR pâ
figshare; Vrije Univ...arrow_drop_down
figshare; Vrije Universiteit Amsterdam (VU Amsterdam) - Institutional Repository
Dataset . 2019
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Additional file 8: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci
Research datakeyboard_double_arrow_right Dataset 2019 Netherlands figshare AKA | Genomic epidemiology of a..., AKA | Epigenetic pathways to ob..., EC | GMI
Authors: Gupta, Richa; Dongen, Jenny; Fu, Yu; Abdellaoui, Abdel; +7 Authors
Gupta, Richa; Dongen, Jenny; Fu, Yu; Abdellaoui, Abdel; Tyndale, Rachel; Velagapudi, Vidya; Dorret Boomsma; Korhonen, Tellervo; Kaprio, Jaakko; Loukola, Anu; Ollikainen, Miina;
doi: 10.6084/m9.figshare.7551761.v1
doi: 10.6084/m9.figshare.7551761.v1
Table S5. Mediation analysis omnibus P values for the 19 meQTLs associated with serum cotinine levels. (XLS 33 kb)
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Research data supporting "Common variation in genes encoding small GTPases and ovarian cancer risk": GTPases candidate gene SNP genotypes

Additional file 5: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci

Additional file 1: of No difference in renal injury and fibrosis between wild-type and NOD1/NOD2 double knockout mice with chronic kidney disease induced by ureteral obstruction

Additional file 10: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci

Additional file 8: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci

Additional file 5: of Comparative genomics and biological characterization of sequential Pseudomonas aeruginosa isolates from persistent airways infection

Additional file 12: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci

CCDC 1948849: Experimental Crystal Structure Determination

Additional file 3 of The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry

nmr structure of urotensin peptide asp-c[cys-phe-trp-(n-me)lys-tyr- cys]-val in sds solution

Research data supporting "Common variation in genes encoding small GTPases and ovarian cancer risk": GTPases candidate gene SNP genotypes

Additional file 5: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci

Additional file 1: of No difference in renal injury and fibrosis between wild-type and NOD1/NOD2 double knockout mice with chronic kidney disease induced by ureteral obstruction

Additional file 10: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci

Additional file 8: of Epigenome-wide association study of serum cotinine in current smokers reveals novel genetically driven loci

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