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Arkona Basin (southwestern Baltic Sea) is a seasonally-hypoxic basin characterized by the presence of free methane gas in its youngest organic-rich muddy stratum. Through the use of reactive transport models, this study tracks the development of the methane geochemistry in Arkona Basin as this muddy sediment became deposited during the last 8 kyr. Four cores are modeled each pertaining to a unique geochemical scenario according to their respective contemporary geochemical profiles. Ultimately the thickness of the muddy sediment and the flux of particulate organic carbon are crucial in determining the advent of both methanogenesis and free methane gas, the timescales over which methanogenesis takes over as a dominant reaction pathway for organic matter degradation, and the timescales required for free methane gas to form.

Reservoir sediments sequester significant amounts of organic carbon (OC), but at the same time, high amounts of methane (CH4) can be produced and emitted during the degradation of sediment OC. While the greenhouse gas emission of reservoirs has received a lot of attention, there is a lack of studies focusing on OC burial. In particular, there are no studies on reservoir OC burial in the Amazon, even though hydropower is expanding in the basin. Here we present results from the first investigation of OC burial and CH4 concentrations in the sediments of an Amazonian hydroelectric reservoir. We performed sub-bottom profiling, sediment coring and sediment pore water analysis in the Curuá Una (CUN) reservoir (Amazon, Brazil) during rising- and falling-water periods. The spatially resolved average sediment accumulation rate was 0.6 cm yr−1, and the average OC burial rate was 91 g C m−2 yr−1. This is the highest OC burial rate on record for low-latitude hydroelectric reservoirs. Such a high rate probably results from a high OC deposition onto the sediment, which compensates the high OC mineralization at a 28–30 ∘C water temperature. Elevated OC burial was found near the dam and close to major river inflow areas. C:N ratios between 10.3 and 17 (average ± SD: 12.9±2.1) suggest that both land-derived and aquatic OC accumulate in CUN sediments. About 23 % of the sediment pore water samples had dissolved CH4 above the saturation concentration. This represents a higher share than in other hydroelectric reservoirs, indicating a high potential for CH4 ebullition, particularly in river inflow areas.

Monoterpene emissions from Scots pine have traditionally been assumed to originate as evaporation from specialized storage pools. More recently, the significance of de novo emissions, originating directly from monoterpene biosynthesis, has been recognized. To study the role of biosynthesis at the ecosystem scale, we measured monoterpene emissions from a Scots pine dominated forest in southern Finland using the disjunct eddy covariance method combined with proton transfer reaction mass spectrometry. The interpretation of the measurements was based on a correlation analysis and a hybrid emission algorithm describing both de novo and pool emissions. During the measurement period May–August 2007, the monthly medians of daytime emissions were 200, 290, 180, and 200 μg m−2 h−1. The emissions were partly light dependent, probably due to de novo biosynthesis. The emission potential for both de novo and pool emissions exhibited a decreasing summertime trend. The ratio of the de novo emission potential to the total emission potential varied between 30 % and 46 %. Although the monthly changes were not significant, the ratio always differed statistically from zero, suggesting that the role of de novo biosynthesis was observable. Given the uncertainties in this study, we conclude that more accurate estimates of the contribution of de novo emissions are required for improving monoterpene emission algorithms for Scots pine dominated forests.

Ocean acidification from the uptake of anthropogenic carbon is simulated for the industrial period and IPCC SRES emission scenarios A2 and B1 with a global coupled carbon cycle-climate model. Earlier studies identified seawater saturation state with respect to aragonite, a mineral phase of calcium carbonate, as a key variable governing impacts on corals and other shell-forming organisms. Globally in the A2 scenario, water saturated by more than 300%, considered suitable for coral growth, vanishes by 2070 AD (CO2≈630 ppm), and the ocean volume fraction occupied by saturated water decreases from 42% to 25% over this century. The largest simulated pH changes worldwide occur in Arctic surface waters, where hydrogen ion concentration increases by up to 185% (ΔpH=−0.45). Projected climate change amplifies the decrease in Arctic surface mean saturation and pH by more than 20%, mainly due to freshening and increased carbon uptake in response to sea ice retreat. Modeled saturation compares well with observation-based estimates along an Arctic transect and simulated changes have been corrected for remaining model-data differences in this region. Aragonite undersaturation in Arctic surface waters is projected to occur locally within a decade and to become more widespread as atmospheric CO2 continues to grow. The results imply that surface waters in the Arctic Ocean will become corrosive to aragonite, with potentially large implications for the marine ecosystem, if anthropogenic carbon emissions are not reduced and atmospheric CO2 not kept below 450 ppm.

Cable bacteria are multicellular, filamentous microorganisms that are capable of transporting electrons over centimeter-scale distances. Although recently discovered, these bacteria appear to be widely present in the seafloor, and when active they exert a strong imprint on the local geochemistry. In particular, their electrogenic metabolism induces unusually strong pH excursions in aquatic sediments, which induces considerable mineral dissolution, and subsequent mineral reprecipitation. However, at present, it is unknown whether and how cable bacteria play an active or direct role in the mineral reprecipitation process. To this end we present an explorative study of the formation of sedimentary minerals in and near filamentous cable bacteria using a combined approach of electron microscopy and spectroscopic techniques. Our observations reveal the formation of polyphosphate granules within the cells and two different types of biomineral formation directly associated with multicellular filaments of these cable bacteria: (i) the attachment and incorporation of clay particles in a coating surrounding the bacteria and (ii) encrustation of the cell envelope by iron minerals. These findings suggest a complex interaction between cable bacteria and the surrounding sediment matrix, and a substantial imprint of the electrogenic metabolism on mineral diagenesis and sedimentary biogeochemical cycling. In particular, the encrustation process leaves many open questions for further research. For example, we hypothesize that the complete encrustation of filaments might create a diffusion barrier and negatively impact the metabolism of the cable bacteria.

Changes in marine net primary productivity (PP) and export of particulate organic carbon (EP) are projected over the 21st century with four global coupled carbon cycle-climate models. These include representations of marine ecosystems and the carbon cycle of different structure and complexity. All four models show a decrease in global mean PP and EP between 2 and 20% by 2100 relative to preindustrial conditions, for the SRES A2 emission scenario. Two different regimes for productivity changes are consistently identified in all models. The first chain of mechanisms is dominant in the low- and mid-latitude ocean and in the North Atlantic: reduced input of macro-nutrients into the euphotic zone related to enhanced stratification, reduced mixed layer depth, and slowed circulation causes a decrease in macro-nutrient concentrations and in PP and EP. The second regime is projected for parts of the Southern Ocean: an alleviation of light and/or temperature limitation leads to an increase in PP and EP as productivity is fueled by a sustained nutrient input. A region of disagreement among the models is the Arctic, where three models project an increase in PP while one model projects a decrease. Projected changes in seasonal and interannual variability are modest in most regions. Regional model skill metrics are proposed to generate multi-model mean fields that show an improved skill in representing observation-based estimates compared to a simple multi-model average. Model results are compared to recent productivity projections with three different algorithms, usually applied to infer net primary production from satellite observations.

Atmospheric CO2 and climate projections for the next century vary widely across current Earth system models (ESMs), owing to different representations of the interactions between the marine and land carbon cycle on the one hand, and climate change and increasing atmospheric CO2 on the other hand. Several efforts have been made in the last years to analyse these differences in detail in order to suggest model improvements. Here we review these efforts and analyse their successes, but also the associated uncertainties that hamper the best use of the available observations to constrain and improve the ESMs models. The aim of this paper is to highlight challenges in improving the ESMs that result from: (i) uncertainty about important processes in terrestrial and marine ecosystems and their response to climate change and increasing atmospheric CO2; (ii) structural and parameter-related uncertainties in current land and marine models; (iii) uncertainties related to observations and the formulations of model performance metrics. We discuss the implications of these uncertainties for reducing the spread in future projections of ESMs and suggest future directions of work to overcome these uncertainties.

The present study provides new knowledge about the so far largely unexplored Coral Patch seamount which is located in the NE Atlantic Ocean half-way between the Iberian Peninsula and Madeira. For the first time a detailed hydroacoustic mapping (MBES) in conjunction with video surveys (ROV, camera sled) were performed to describe the sedimentological and biological characteristics of this sub-elliptical ENE-WSW elongated seamount. Video observations were restricted to the southwestern summit area of Coral Patch seamount (water depth: 560–760 m) and revealed that this part of the summit is dominated by exposed hard substrate, whereas soft sediment is just a minor substrate component. Although exposed hardgrounds are dominant for this summit area and, thus, offer suitable habitat for settlement by benthic organisms, the benthic megafauna shows rather scarce occurrence. In particular, scleractinian framework-building cold-water corals are apparently rare with very few isolated and small-sized live occurrences of the species Lophelia pertusa and Madrepora oculata. In contrast, dead coral framework and coral rubble are more frequent pointing to a higher abundance of cold-water corals on Coral Patch during the recent past. This is even supported by the observation of fishing lines that got entangled with rather fresh-looking coral frameworks. Overall, long lines and various species of commercially important fish were frequently observed emphasising the potential of Coral Patch as an important target for fisheries that may have impacted the entire benthic community. Hydroacoustic seabed classification covered the entire summit of Coral Patch and its northern and southern flanks (water depth: 560–2660 m) and revealed extended areas dominated by mixed and soft sediments at the northern flank and to a minor degree at its easternmost summit and southern flank. Nevertheless, these data also predict most of the summit area to be dominated by exposed bedrock which would offer suitable habitat for benthic organisms. By comparing the locally restricted video observations and the broad-scale monitoring of a much larger and deeper seafloor area as derived by hydroacoustic seabed classification, it becomes obvious that habitat information obtained by in situ sampling may provide a rather scattered pattern about the entire seamount ecosystem. Solely with a combination of both methods, a satisfactory approach to describe the diverse characteristics of a seamount ecosystem can be derived which is in turn indispensable for future scientific monitoring campaigns as well as management and conservation purposes.

Recent observations and modelling studies suggest that biogeochemical changes can mask atmospheric CO2-induced pH decreases. Data collected by the Dutch monitoring authorities in different coastal systems (North Sea, Wadden Sea, Ems-Dollard, Eastern Scheldt and Scheldt estuary) since 1975 provide an excellent opportunity to test whether this is the case in the Dutch coastal zone. The time-series were analysed using Multi-Resolution Analysis (MRA) which resulted in the identification of system-dependent patterns on both seasonal and intra-annual time scales. The observed rates of pH change greatly exceed those expected from enhanced CO2 uptake, thus suggesting that other biogeochemical processes, possibly related to changes in nutrient loading, can play a dominant role in ocean acidification.

Arctic tundra is facing unprecedented warming, resulting in shifts in the vegetation, thaw regimes, and potentially in the ecosystem–atmosphere exchange of carbon (C). However, the estimates of regional carbon dioxide (CO2) and methane (CH4) budgets are highly uncertain. We measured CO2 and CH4 fluxes, vegetation composition and leaf area index (LAI), thaw depth, and soil wetness in Tiksi (71∘ N, 128∘ E), a heterogeneous site located within the prostrate dwarf-shrub tundra zone in northeastern Siberia. Using the closed chamber method, we determined the net ecosystem exchange (NEE) of CO2, ecosystem respiration in the dark (ER), ecosystem gross photosynthesis (Pg), and CH4 flux during the growing season. We applied a previously developed high-spatial-resolution land cover map over an area of 35.8 km2 for spatial extrapolation. Among the land cover types varying from barren to dwarf-shrub tundra and tundra wetlands, the NEE and Pg at the photosynthetically active photon flux density of 800 µmol m−2 h−1 (NEE800 and Pg800) were greatest in the graminoid-dominated habitats, i.e., streamside meadow and fens, with NEE800 and Pg800 of up to −21 (uptake) and 28 mmol m−2 h−1, respectively. Vascular LAI was a robust predictor of both NEE800 and Pg800 and, on a landscape scale, the fens were disproportionately important for the summertime CO2 sequestration. Dry tundra, including the dwarf-shrub and lichen tundra, had smaller CO2 exchange rates. The fens were the largest source of CH4, while the dry mineral soil tundra consumed atmospheric CH4, which on a landscape scale amounted to −9 % of the total CH4 balance during the growing season. The largest seasonal mean CH4 consumption rate of 0.02 mmol m−2 h−1 occurred in sand- and stone-covered barren areas. The high consumption rate agrees with the estimate based on the eddy covariance measurements at the same site. We acknowledge the uncertainty involved in spatial extrapolations due to a small number of replicates per land cover type. This study highlights the need to distinguish different land cover types including the dry tundra habitats to account for their different CO2 and CH4 flux patterns, especially the consumption of atmospheric CH4, when estimating tundra C exchange on a larger spatial scale.