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80 Research products, page 1 of 8

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  • Open Access
    Authors: 
    Orton, Richard;
    Publisher: Zenodo
    Project: UKRI | Viral Genomics and Bioinf... (MC_UU_12014/12), WT | Mitigating bat viruses: f... (217221)

    V1 of the code and V6 and V8 of the ISG_CG analysis files

  • Open Access English
    Authors: 
    Zhiyi Wu; Philip Biggin;
    Publisher: Zenodo
    Project: WT | Oxford - OXION (203741)

    This is a Gromacs port of the amber LIPID17 force field. To use this force field, the user can construct the lipid bilayer using Charmm-GUI and convert the atom names to the amber atom names using charmmlipid2amber.py. This port has also retained the modular feature of ...

  • Research software . 2019
    Open Access
    Authors: 
    Daniel Wells;
    Publisher: Zenodo
    Project: WT | Development of statistica... (098387), NIH | GENOMICS OF SPERMATOGENIC... (5R01HD078641-05), NIH | MODELING THE EFFECTS OF S... (5R01MH101810-02), WT | Oxford, Genomic Medicine ... (109109), NIH | Core--Pharmacology Facili... (5P30CA091842-05)

    Resubmission

  • Open Access English
    Authors: 
    Jonathan Harrison;
    Publisher: Zenodo
    Project: WT | Probing intra-cellular dy... (208384), UKRI | Kinetochore life-historie... (BB/R009503/1), WT | KINETOCHORES AS FORCE SEN... (106151)

    Implementation of a minimal computational model of HURP dynamics on kinetochore-fibres and inference methods to fit this model to experimental data via Markov chain Monte Carlo.

  • Research software . 2022
    Open Access
    Authors: 
    William T Clarke;
    Publisher: Zenodo
    Project: WT | Wellcome Centre for Integ... (203139)

    Spec2nii is a program for multi-format conversion of in vivo MRS to the NIfTI-MRS format. Spec2nii is developed at the Wellcome Centre for Integrative Neuroimaging (FMRIB), at the University of Oxford. It is hosted at github.com/wtclarke/spec2nii.

  • Open Access
    Authors: 
    Gregory Jefferis;
    Publisher: Zenodo
    Project: WT | Functional and structural... (076726), NIH | Assembly of the Central O... (5R01DC005982-13), EC | OlfSwitch (649111), EC | OLFPERCEPT (211089), NIH | Neuroimaging of Alcohol-i... (5U01AA013521-13)

    This is the classic MacOSX GUI for the CMTK registration tools (formerly called IGS suite). This is a frontend for software developed at https://www.nitrc.org/projects/cmtk. Please see http://flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=warping_manual:registration_gu...

  • Research software . 2020
    Open Access English
    Authors: 
    Lyon, Matthew S; Andrews, Shea J; Elsworth, Ben; Gaunt, Tom R; Hemani, Gibran; Marcora, Edoardo;
    Publisher: Zenodo
    Project: WT | The causal map of the hum... (208806), UKRI | Data mining epidemiologic... (MC_UU_00011/4)

    Runtime performance for querying GWAS summary statistics in plain/tabular text and VCF

  • Research software . 2022
    Open Access
    Authors: 
    Jefferis, Gregory; Bates, Alexander; Franconville, Romain; Costa, Marta; Sridhar Jagannathan; Dokato;
    Publisher: Zenodo
    Project: WT | The connectome of olfacto... (203261), EC | OlfSwitch (649111)

    Fix problem with numeric bodyids by @jefferis in https://github.com/natverse/neuprintr/pull/142 Feature/meta more fields by @jefferis in https://github.com/natverse/neuprintr/pull/144 Fix: more metadata fields by @jefferis in https://github.com/natverse/neuprintr/pull/...

  • Open Access English
    Authors: 
    SaiTheinThanTun;
    Publisher: Zenodo
    Project: WT | Targeting malaria hotspot... (205240)

    First release of the R script for Human Movement Pattern manuscript.

  • Open Access English
    Authors: 
    Carlyon, R. P.; Guérit., F.;
    Publisher: Zenodo
    Project: WT

    Matlab code used in the simulations of the ALFIES (ALternating Frequency Interleaved Electrical Stimulation) method by Carlyon et al. (2020). Code has been tested with Matlab 2017a and Matlab 2019b.