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integration_instructions Research softwarekeyboard_double_arrow_right Software 2018Zenodo NSF | Tropospheric Anthropogeni... (1339264)Grandey, Benjamin S.;Grandey, Benjamin S.;Supplements v7 draft of "Effective radiative forcing in the aerosol-climate model CAM5.3-MARC-ARG", by B. S. Grandey, D. Rothenberg, A. Avramov, Q. Jin, H.-H. Lee, X. Liu, Z. Lu, S. Albani, and C. Wang. Update 2018-10-22: the article has now been accepted for publication in ACP.
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visibility 95visibility views 95 download downloads 11 Powered byintegration_instructions Research softwarekeyboard_double_arrow_right Software 2017 Rbio.tools NIH | Regional Oncology Researc... (3P30CA006973-53S2), NSF | Multi-study Genomic Data ... (0342111), NIH | Tools for Large-Scale Ana... (1R21CA135877-01)Marchionni, Luigi;Marchionni, Luigi;Package designed to perform and integrate gene set enrichment results across multiple genomic platforms.
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For further information contact us at helpdesk@openaire.euintegration_instructions Research softwarekeyboard_double_arrow_right Software 2019figshare NSF | Tailoring Genomic Data to... (0543285)Goto, Hiroki; Dickins, Benjamin; Afgan, Enis; Paul, Ian; Taylor, James; Makova, Kateryna; Nekrutenko, Anton;Additional file 3: FN-FP-simulation-script.py. A script for performing simulation performed in Results and discussion. (PY 5 KB)
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integration_instructions Research softwarekeyboard_double_arrow_right Software 2017 Rbio.tools NSF | CAREER: Sparse-sampling i... (1054826)Yu, Danni;Yu, Danni;The purpose of this package is to discover the genes that are differentially expressed between two conditions in RNA-seq experiments. Gene expression is measured in counts of transcripts and modeled with the Negative Binomial (NB) distribution using a shrinkage approach for dispersion estimation.
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For further information contact us at helpdesk@openaire.euintegration_instructions Research softwarekeyboard_double_arrow_right Software 2015Zenodo NSF | NCRN-MN: Cornell Census-N... (1131848)Abowd, John M.; Schmutte, Ian M.;Abowd, John M.; Schmutte, Ian M.;This archive contains code to replicate the analysis in Abowd, John M. and Ian M. Schmutte (2015) "Economic Analysis and Statistical Disclosure Limitation," Brookings Papers on Economic Activity (Spring): 271-293 (including discussion), URL: https://www.brookings.edu/wp-content/uploads/2015/03/2015a_abowd.pdf or http://digitalcommons.ilr.cornell.edu/ldi/24/.
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visibility 109visibility views 109 download downloads 7 Powered byintegration_instructions Research softwarekeyboard_double_arrow_right Software 2022Zenodo NSF | Collaborative Research: T... (1029483), NSF | Collaborative Research: T... (1029268)Voet, Gunnar; Alford., Matthew H.; Girton, James B.; Carter, Glenn S.;Voet, Gunnar; Alford., Matthew H.; Girton, James B.; Carter, Glenn S.;Samoan Passage Data Archive. Please note that the copy here on zenodo contains only the GitHub repository, data are stored elsewhere. Head to https://github.com/gunnarvoet/sp-data-archive for instructions on how to obtain the data.
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visibility 17visibility views 17 download downloads 0 Powered byintegration_instructions Research softwarekeyboard_double_arrow_right Software 2022Zenodo NSF | CRCNS US-German Data Shar... (1429999)Hanke, Michael; Halchenko, Yaroslav O.; Poldrack, Benjamin; Meyer, Kyle; Solanky, Debanjum Singh; Alteva, Gergana; Gors, Jason; MacFarlane, Dave; Olaf Häusler, Christian; Olson, Taylor; Waite, Alex; De La Vega, Alejandro; Sochat, Vanessa; Keshavan, Anisha; Ma, Feilong; Christian, Horea; Poelen, Jorrit; Skytén, Kusti; Visconti di Oleggio Castello, Matteo; Hardcastle, Nell; Stoeter, Torsten; C Lau, Vicky; Markiewicz, Christopher J.; Wagner, Adina S.; Nichols, B. Nolan; Mika Pflüger; Mönch, Christian; Gau, Rémi; Szczepanik, Michał;🐛 Bug Fix Prevent duplicated result rendering when searching in default datasets #6765 (@christian-monch) BF(workaround): skip test_ria_postclonecfg on OSX for now (@yarikoptic) BF(workaround to #6759): if saving credential failed, just log error and continue #6762 (@yarikoptic) Prevent reentry of a runner instance #6737 (@christian-monch) Authors: 2 Christian Mönch (@christian-monch) Yaroslav Halchenko (@yarikoptic)
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visibility 9visibility views 9 download downloads 0 Powered byintegration_instructions Research softwarekeyboard_double_arrow_right Software 2017 Rbio.tools NIH | Integrative Resource to D... (3U24AG051129-04S1), NSF | ChemMine Tools: an Open S... (0957099)Backman, Tyler;Backman, Tyler;Computational tool that enables simultaneous analysis of thousands of bioassay experiments performed over a diverse set of compounds and biological targets. Unique features include support for large-scale cross-target analyses of both public and custom bioassays, generation of high throughput screening fingerprints (HTSFPs), and an optional preloaded database that provides access to a substantial portion of publicly available bioactivity data.
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For further information contact us at helpdesk@openaire.euintegration_instructions Research softwarekeyboard_double_arrow_right Software 2018Zenodo NIH | The biophysical basis of ... (5R01GM088344-03), NSF | BEACON: An NSF Center for... (0939454)M. UmutCcaglar; Adam J. Hockenberry; Claus O. Wilke;M. UmutCcaglar; Adam J. Hockenberry; Claus O. Wilke;Data and code for: Mehmet U. Caglar, Adam J. Hockenberry, and Claus O. Wilke Predicting bacterial growth conditions from mRNA and protein abundances
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visibility 20visibility views 20 download downloads 1 Powered byintegration_instructions Research softwarekeyboard_double_arrow_right Software 2021 EnglishZenodo NSF | SCC-IRG Track 2: Resilien... (1737424), NSF | Collaborative Research: C... (1753639)Cayelan C. Carey; R. Quinn Thomas; Ryan P. McClure; Alexandria G. Hounshell; Whitney M. Woelmer; Heather L. Wander; Abigail S. L. Lewis;This repository contains the files for calibrating and running the General Lake Model-Aquatic EcoDynamics model for Falling Creek Reservoir (Vinton, VA, USA), analyzing the model output, and generating figures for the manuscript on the effects of anoxia on reservoir biogeochemistry by Carey et al.
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integration_instructions Research softwarekeyboard_double_arrow_right Software 2018Zenodo NSF | Tropospheric Anthropogeni... (1339264)Grandey, Benjamin S.;Grandey, Benjamin S.;Supplements v7 draft of "Effective radiative forcing in the aerosol-climate model CAM5.3-MARC-ARG", by B. S. Grandey, D. Rothenberg, A. Avramov, Q. Jin, H.-H. Lee, X. Liu, Z. Lu, S. Albani, and C. Wang. Update 2018-10-22: the article has now been accepted for publication in ACP.
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visibility 95visibility views 95 download downloads 11 Powered byintegration_instructions Research softwarekeyboard_double_arrow_right Software 2017 Rbio.tools NIH | Regional Oncology Researc... (3P30CA006973-53S2), NSF | Multi-study Genomic Data ... (0342111), NIH | Tools for Large-Scale Ana... (1R21CA135877-01)Marchionni, Luigi;Marchionni, Luigi;Package designed to perform and integrate gene set enrichment results across multiple genomic platforms.
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For further information contact us at helpdesk@openaire.euintegration_instructions Research softwarekeyboard_double_arrow_right Software 2019figshare NSF | Tailoring Genomic Data to... (0543285)Goto, Hiroki; Dickins, Benjamin; Afgan, Enis; Paul, Ian; Taylor, James; Makova, Kateryna; Nekrutenko, Anton;Additional file 3: FN-FP-simulation-script.py. A script for performing simulation performed in Results and discussion. (PY 5 KB)
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integration_instructions Research softwarekeyboard_double_arrow_right Software 2017 Rbio.tools NSF | CAREER: Sparse-sampling i... (1054826)Yu, Danni;Yu, Danni;The purpose of this package is to discover the genes that are differentially expressed between two conditions in RNA-seq experiments. Gene expression is measured in counts of transcripts and modeled with the Negative Binomial (NB) distribution using a shrinkage approach for dispersion estimation.
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For further information contact us at helpdesk@openaire.euintegration_instructions Research softwarekeyboard_double_arrow_right Software 2015Zenodo NSF | NCRN-MN: Cornell Census-N... (1131848)Abowd, John M.; Schmutte, Ian M.;Abowd, John M.; Schmutte, Ian M.;This archive contains code to replicate the analysis in Abowd, John M. and Ian M. Schmutte (2015) "Economic Analysis and Statistical Disclosure Limitation," Brookings Papers on Economic Activity (Spring): 271-293 (including discussion), URL: https://www.brookings.edu/wp-content/uploads/2015/03/2015a_abowd.pdf or http://digitalcommons.ilr.cornell.edu/ldi/24/.
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visibility 109visibility views 109 download downloads 7 Powered byintegration_instructions Research softwarekeyboard_double_arrow_right Software 2022Zenodo NSF | Collaborative Research: T... (1029483), NSF | Collaborative Research: T... (1029268)Voet, Gunnar; Alford., Matthew H.; Girton, James B.; Carter, Glenn S.;Voet, Gunnar; Alford., Matthew H.; Girton, James B.; Carter, Glenn S.;Samoan Passage Data Archive. Please note that the copy here on zenodo contains only the GitHub repository, data are stored elsewhere. Head to https://github.com/gunnarvoet/sp-data-archive for instructions on how to obtain the data.
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visibility 17visibility views 17 download downloads 0 Powered byintegration_instructions Research softwarekeyboard_double_arrow_right Software 2022Zenodo NSF | CRCNS US-German Data Shar... (1429999)Hanke, Michael; Halchenko, Yaroslav O.; Poldrack, Benjamin; Meyer, Kyle; Solanky, Debanjum Singh; Alteva, Gergana; Gors, Jason; MacFarlane, Dave; Olaf Häusler, Christian; Olson, Taylor; Waite, Alex; De La Vega, Alejandro; Sochat, Vanessa; Keshavan, Anisha; Ma, Feilong; Christian, Horea; Poelen, Jorrit; Skytén, Kusti; Visconti di Oleggio Castello, Matteo; Hardcastle, Nell; Stoeter, Torsten; C Lau, Vicky; Markiewicz, Christopher J.; Wagner, Adina S.; Nichols, B. Nolan; Mika Pflüger; Mönch, Christian; Gau, Rémi; Szczepanik, Michał;🐛 Bug Fix Prevent duplicated result rendering when searching in default datasets #6765 (@christian-monch) BF(workaround): skip test_ria_postclonecfg on OSX for now (@yarikoptic) BF(workaround to #6759): if saving credential failed, just log error and continue #6762 (@yarikoptic) Prevent reentry of a runner instance #6737 (@christian-monch) Authors: 2 Christian Mönch (@christian-monch) Yaroslav Halchenko (@yarikoptic)
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visibility 9visibility views 9 download downloads 0 Powered byintegration_instructions Research softwarekeyboard_double_arrow_right Software 2017 Rbio.tools NIH | Integrative Resource to D... (3U24AG051129-04S1), NSF | ChemMine Tools: an Open S... (0957099)Backman, Tyler;Backman, Tyler;Computational tool that enables simultaneous analysis of thousands of bioassay experiments performed over a diverse set of compounds and biological targets. Unique features include support for large-scale cross-target analyses of both public and custom bioassays, generation of high throughput screening fingerprints (HTSFPs), and an optional preloaded database that provides access to a substantial portion of publicly available bioactivity data.
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For further information contact us at helpdesk@openaire.euintegration_instructions Research softwarekeyboard_double_arrow_right Software 2018Zenodo NIH | The biophysical basis of ... (5R01GM088344-03), NSF | BEACON: An NSF Center for... (0939454)M. UmutCcaglar; Adam J. Hockenberry; Claus O. Wilke;M. UmutCcaglar; Adam J. Hockenberry; Claus O. Wilke;Data and code for: Mehmet U. Caglar, Adam J. Hockenberry, and Claus O. Wilke Predicting bacterial growth conditions from mRNA and protein abundances
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visibility 20visibility views 20 download downloads 1 Powered byintegration_instructions Research softwarekeyboard_double_arrow_right Software 2021 EnglishZenodo NSF | SCC-IRG Track 2: Resilien... (1737424), NSF | Collaborative Research: C... (1753639)Cayelan C. Carey; R. Quinn Thomas; Ryan P. McClure; Alexandria G. Hounshell; Whitney M. Woelmer; Heather L. Wander; Abigail S. L. Lewis;This repository contains the files for calibrating and running the General Lake Model-Aquatic EcoDynamics model for Falling Creek Reservoir (Vinton, VA, USA), analyzing the model output, and generating figures for the manuscript on the effects of anoxia on reservoir biogeochemistry by Carey et al.
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