search
Include:
153 Research products, page 1 of 16

  • Research software
  • National Institutes of Health

10
arrow_drop_down
Relevance
arrow_drop_down
  • English
    Authors: 
    Ruibang Luo;
    Publisher: Code Ocean
    Project: NIH | A Software Framework for ... (5R01HL129239-02), NIH | Computational Methods for... (2R01HG006677-15A1)

    16GT is a variant caller utilizing a 16-genotype probabilistic model to unify SNP and indel calling in a single algorithm. 16GT is easy to use. The default parameters will fit most of the use cases with human genome. For the detailed parameters for each module, please r...

  • Open Access
    Authors: 
    Alessandro Rigano; Alexander Balashov; Shannon Ehmsen; Serkan Utku Öztürk; Burak Alver; Caterina Strambio-De-Castillia;
    Publisher: Zenodo
    Project: NIH | Visualizing local and glo... (1U01EB021238-01), NIH | 4D Nucleome Network Data ... (5U01CA200059-03)

    This is the latest stable beta release of the React implementation of the Micro-Meta App. This version of the Micro-Meta App is based on the Core and Basic extension of the v2.01 of the 4DN-BINA-OME Microscopy Metadata specifications which allow documenting transmitted ...

  • Research software . 2019
    Open Access
    Authors: 
    Daniel Wells;
    Publisher: Zenodo
    Project: WT | Development of statistica... (098387), NIH | GENOMICS OF SPERMATOGENIC... (5R01HD078641-05), NIH | MODELING THE EFFECTS OF S... (5R01MH101810-02), WT | Oxford, Genomic Medicine ... (109109), NIH | Core--Pharmacology Facili... (5P30CA091842-05)

    Resubmission

  • English
    Authors: 
    Oliveira, Pedro H.;
    Publisher: Code Ocean
    Project: NIH | Investigating genomic fac... (5R01AI119145-04), NIH | Methods for Multiscale an... (5R01GM114472-02), NIH | Regulation of Clostridium... (5R01AI107029-02)

    Wrapper that takes a genome FASTA file and a methylation motif, builds a signal file, runs the MSR pipeline, parses, and plots its output.

  • Open Access
    Authors: 
    M. UmutCcaglar; Adam J. Hockenberry; Claus O. Wilke;
    Publisher: Zenodo
    Project: NIH | The biophysical basis of ... (5R01GM088344-03), NSF | BEACON: An NSF Center for... (0939454)

    Data and code for: Mehmet U. Caglar, Adam J. Hockenberry, and Claus O. Wilke Predicting bacterial growth conditions from mRNA and protein abundances

  • English
    Authors: 
    Ankita Nand;
    Publisher: Code Ocean
    Project: NIH | Bioinformatics Strategies... (5R01LM010098-08), NSERC , NIH | Machine Learning Predicti... (5R01LM009012-08), NIH | Breast and prostate cance... (5R01CA155004-06), CIHR

    This is an example capsule for CoBE(https://www.pmcobe.ca) executable. The capsule is made using software, source code and data coming from public sources and other authors. Please find the original links for code/data in capsule description below: https://biodatamining...

  • Open Access
    Authors: 
    Atul Deshpande; Anthony Gitter;
    Publisher: Zenodo
    Project: NSF | THE OPEN SCIENCE GRID The... (1148698), NIH | Midwest Progenitor Cell C... (5U01HL099773-07)

    {"references": ["Deshpande et al. (2022) Network inference with Granger causality ensembles on single-cell transcriptomics. Cell Reports, 38:6."]}

  • Open Access
    Authors: 
    Gregory Jefferis;
    Publisher: Zenodo
    Project: WT | Functional and structural... (076726), NIH | Assembly of the Central O... (5R01DC005982-13), EC | OlfSwitch (649111), EC | OLFPERCEPT (211089), NIH | Neuroimaging of Alcohol-i... (5U01AA013521-13)

    This is the classic MacOSX GUI for the CMTK registration tools (formerly called IGS suite). This is a frontend for software developed at https://www.nitrc.org/projects/cmtk. Please see http://flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=warping_manual:registration_gu...

  • Open Access
    Authors: 
    Witkowska, Agata;
    Publisher: Zenodo
    Project: NIH | Core A: Laser Fluorescenc... (5P01GM072694-07)

    This is a simulation of diffusion of a docked liposome on the GUV surface while being tethered by SNARE complexes. The script was developed by Agata Witkowska for the study Witkowska A., Spindler S., Gholami Mahmoodabadi R., Sandoghdar V., Jahn, R. Journal (2020) "...

  • Research software . 2019
    Open Access English
    Authors: 
    Daniel Asarnow; Eugene Palovcak; Yifan Cheng;
    Publisher: Zenodo
    Project: NIH | Structures and gating mec... (5R01GM098672-07)

    UCSF pyem is a suite of Python programs for data analysis in electron microscopy of biological samples. Key features include symmetry expansion, multi-body refinement, partial signal subtraction, metadata queries, and interoperability with other cryo-EM image processing...