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  • Research software . 2021
    Open Access
    Authors: 
    Marc Fehling; Peter Munch; Wolfgang Bangerth;

    doi: 10.5281/zenodo.6423570

    Publisher: Zenodo
    Project: NSF | Collaborative Research: F... (1835673), NSF | Collaborative Research: E... (1821210)

    The tutorial demonstrates how to apply hp-adaptive finite element methods efficiently on thousands of processes with distributed memory access. We make use of a hybrid geometric multigrid approach combined with matrix-free methods. This version requires a deal.II librar...

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  • Research software . 2019
    Open Access
    Authors: 
    Goto, Hiroki; Dickins, Benjamin; Afgan, Enis; Paul, Ian; Taylor, James; Makova, Kateryna; Nekrutenko, Anton;

    doi: 10.6084/m9.figshare.10037495.v1 , 10.6084/m9.figshare.10037495

    Publisher: figshare
    Project: NSF | Tailoring Genomic Data to... (0543285)

    Additional file 3: FN-FP-simulation-script.py. A script for performing simulation performed in Results and discussion. (PY 5 KB)

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  • Research software . 2014
    Open Access English
    Authors: 
    Gad, Samah;

    handle: 10919/47101

    Country: United States

    We developed a dynamic temporal segmentation algorithm that wraps around topic modeling algorithms for the purpose of identifying change points where significant shifts in topics occur. The main task of the segmentation algorithm is to automatically partition the total ...

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  • Research software . 2021
    English
    Authors: 
    Shivakumar, Sachin; Peet, Matthew; Amritam Das;

    doi: 10.24433/co.9425082.v1

    Publisher: Code Ocean
    Project: NSF | CPS: Small: A Convex Fram... (1739990)

    PIETOOLS 2020a is an open source MATLAB toolbox used to solve optimization problems involving Partial Integral operators. Additionally, this toolbox provides class objects and functions for defining and manipulating Partial integral variables and data objects. PIETOOLS ...

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  • Research software . 2020
    Open Access
    Authors: 
    N.A. Malarich;

    doi: 10.5281/zenodo.3930940

    Publisher: Zenodo
    Project: NSF | CAREER: Frequency Comb La... (1454496)

    Nonuniform-Temperature Fitting (NTFit) software package, as explained in the pair of papers "Resolving nonuniform temperature distributions with single-beam absorption spectroscopy." Version 1.0.0-alpha contains length_bin.py, the Tikhonov regularization algor...

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  • Research software . 2021
    Open Access English
    Authors: 
    Cayelan C. Carey; R. Quinn Thomas; Ryan P. McClure; Alexandria G. Hounshell; Whitney M. Woelmer; Heather L. Wander; Abigail S. L. Lewis;

    doi: 10.5281/zenodo.5528865

    Publisher: Zenodo
    Project: NSF | SCC-IRG Track 2: Resilien... (1737424), NSF | Collaborative Research: C... (1753639)

    This repository contains the files for calibrating and running the General Lake Model-Aquatic EcoDynamics model for Falling Creek Reservoir (Vinton, VA, USA), analyzing the model output, and generating figures for the manuscript on the effects of anoxia on reservoir bio...

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  • Research software . 2017
    English
    Authors: 
    Ruibang Luo;

    doi: 10.24433/co.0a812d9b-0ff3-4eb7-825f-76d3cd049a43

    Publisher: Code Ocean
    Project: NIH | A Software Framework for ... (5R01HL129239-02), NIH | Computational Methods for... (2R01HG006677-15A1)

    16GT is a variant caller utilizing a 16-genotype probabilistic model to unify SNP and indel calling in a single algorithm. 16GT is easy to use. The default parameters will fit most of the use cases with human genome. For the detailed parameters for each module, please r...

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  • Research software . 2022
    Open Access English
    Authors: 
    Leonid P. Pryadko; Valery K. Kozin; Vadim A. Shabashov;

    doi: 10.5281/zenodo.6374558 , 10.5281/zenodo.6374733

    Publisher: Zenodo
    Project: NSF | Statistical Mechanics of ... (1820939)

    Release for QDistRnd, a GAP package for computing the distance of a quantum error correcting code linear in a Galois field GF(q), where q must be a power of a prime.

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  • Research software . 2020
    Open Access
    Authors: 
    Unruh, Dominique;

    doi: 10.5281/zenodo.4472921

    Publisher: Zenodo
    Project: NSF | SCREMS: The Computational... (0821725), EC | CerQuS (819317)

    Proof assistant for qRHL

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  • Research software . 2018
    Open Access
    Authors: 
    Benjamin S. Grandey;

    doi: 10.5281/zenodo.1346707 , 10.5281/zenodo.1108270 , 10.5281/zenodo.1163773 , 10.5281/zenodo.1239247

    Publisher: Zenodo
    Project: NSF | Tropospheric Anthropogeni... (1339264)

    Supplements v7 draft of "Effective radiative forcing in the aerosol-climate model CAM5.3-MARC-ARG", by B. S. Grandey, D. Rothenberg, A. Avramov, Q. Jin, H.-H. Lee, X. Liu, Z. Lu, S. Albani, and C. Wang. Update 2018-10-22: the article has now been accepted for ...

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