• Publications close
• National Science Foundation close

Dans les latitudes tempérées élevées, les ongulés donnent généralement naissance dans une fenêtre temporelle étroite lorsque les conditions sont optimales pour la survie de la progéniture au printemps ou au début de l'été, et utilisent une photopériode changeante pour les conceptions temporelles afin d'anticiper ces conditions. Cependant, dans les basses latitudes tropicales, la variation de la durée du jour est minime et la variation des précipitations rend le cycle saisonnier moins prévisible. Néanmoins, plusieurs espèces d'ongulés conservent des pics de naissance étroits dans de telles conditions, tandis que d'autres montrent que les naissances se propagent assez largement tout au long de l'année. Nous avons étudié comment la variation des précipitations d'une année à l'autre et d'une année à l'autre a influencé le moment de la reproduction de quatre espèces d'ongulés montrant ces modèles contrastés dans la région de Masai Mara au Kenya. Les quatre espèces présentaient des pics de naissance au cours de la période optimale putative au début de la saison humide. Pour le hartebeest et l'impala, le pic de naissance est diffus et la progéniture naît tout au long de l'année. En revanche, le topi et le phacochère ont montré une concentration saisonnière étroite de naissances, avec des conceptions supprimées une fois que les précipitations mensuelles sont tombées en dessous d'un seuil. Les fortes précipitations de la saison précédente et les fortes pluies précoces de l'année en cours ont amélioré la survie au stade juvénile de toutes les espèces, à l'exception de l'impala. Nos résultats révèlent comment la variation des précipitations affectant la croissance des graminées et donc la nutrition des herbivores peut régir la phénologie reproductive des ongulés dans les latitudes tropicales où la variation de la longueur du jour est minime. Le mécanisme sous-jacent semble être la suppression des conceptions une fois que les gains nutritionnels deviennent insuffisants. En réagissant de manière proximale à la variation des précipitations au cours de l'année, les ongulés de la savane tropicale sont moins susceptibles d'être affectés négativement par les conséquences du réchauffement climatique sur la phénologie de la végétation que les ongulés du Nord montrant un contrôle photopériodique plus rigide sur le moment de la reproduction. En latitudes templadas altas, los ungulados generalmente dan a luz dentro de una ventana de tiempo estrecha cuando las condiciones son óptimas para la supervivencia de la descendencia en primavera o principios del verano, y utilizan conceptos cambiantes de fotoperíodo a tiempo para anticipar estas condiciones. Sin embargo, en latitudes tropicales bajas, la variación de la duración del día es mínima, y la variación de las precipitaciones hace que el ciclo estacional sea menos predecible. Sin embargo, varias especies de ungulados conservan picos de nacimiento estrechos en tales condiciones, mientras que otras muestran nacimientos muy extendidos a lo largo del año. Investigamos cómo la variación interanual de las precipitaciones influyó en el tiempo reproductivo de cuatro especies de ungulados que muestran estos patrones contrastantes en la región de Masai Mara en Kenia. Las cuatro especies exhibieron picos de nacimiento durante el periodo óptimo putativo en la estación húmeda temprana. Para hartebeest e impala, el pico de nacimiento era difuso y las crías nacían durante todo el año. Por el contrario, topi y jabalí mostraron una estrecha concentración estacional de nacimientos, con concepciones suprimidas una vez que las precipitaciones mensuales cayeron por debajo de un nivel umbral. Las altas precipitaciones en la temporada anterior y las altas lluvias tempranas en el año en curso mejoraron la supervivencia en la etapa juvenil para todas las especies, excepto los impalas. Nuestros hallazgos revelan cómo la variación de la precipitación que afecta el crecimiento de la hierba y, por lo tanto, la nutrición de los herbívoros, puede gobernar la fenología reproductiva de los ungulados en latitudes tropicales donde la variación de la duración del día es mínima. El mecanismo subyacente parece ser la supresión de las concepciones una vez que las ganancias nutricionales se vuelven insuficientes. Al responder proximalmente a la variación de las precipitaciones dentro del año, es menos probable que los ungulados de la sabana tropical se vean afectados negativamente por las consecuencias del calentamiento global para la fenología de la vegetación que los ungulados del norte que muestran un control fotoperiódico más rígido sobre el tiempo reproductivo. In high temperate latitudes, ungulates generally give birth within a narrow time window when conditions are optimal for offspring survival in spring or early summer, and use changing photoperiod to time conceptions so as to anticipate these conditions. However, in low tropical latitudes day length variation is minimal, and rainfall variation makes the seasonal cycle less predictable. Nevertheless, several ungulate species retain narrow birth peaks under such conditions, while others show births spread quite widely through the year. We investigated how within-year and between-year variation in rainfall influenced the reproductive timing of four ungulate species showing these contrasting patterns in the Masai Mara region of Kenya. All four species exhibited birth peaks during the putative optimal period in the early wet season. For hartebeest and impala, the birth peak was diffuse and offspring were born throughout the year. In contrast, topi and warthog showed a narrow seasonal concentration of births, with conceptions suppressed once monthly rainfall fell below a threshold level. High rainfall in the previous season and high early rains in the current year enhanced survival into the juvenile stage for all the species except impala. Our findings reveal how rainfall variation affecting grass growth and hence herbivore nutrition can govern the reproductive phenology of ungulates in tropical latitudes where day length variation is minimal. The underlying mechanism seems to be the suppression of conceptions once nutritional gains become insufficient. Through responding proximally to within-year variation in rainfall, tropical savanna ungulates are less likely to be affected adversely by the consequences of global warming for vegetation phenology than northern ungulates showing more rigid photoperiodic control over reproductive timing. في خطوط العرض المعتدلة العالية، تلد ذوات الحوافر عمومًا في غضون فترة زمنية ضيقة عندما تكون الظروف مثالية لبقاء النسل في الربيع أو أوائل الصيف، وتستخدم تغيير الفترة الضوئية إلى مفاهيم زمنية لتوقع هذه الظروف. ومع ذلك، في خطوط العرض الاستوائية المنخفضة، يكون تباين طول اليوم ضئيلًا، ويجعل تباين هطول الأمطار الدورة الموسمية أقل قابلية للتنبؤ. ومع ذلك، فإن العديد من الأنواع ذوات الحوافر تحتفظ بقمم ولادة ضيقة في ظل هذه الظروف، في حين أن البعض الآخر يظهر أن الولادات تنتشر على نطاق واسع خلال العام. لقد حققنا في كيفية تأثير التباين في هطول الأمطار خلال العام وبين الأعوام على التوقيت التكاثري لأربعة أنواع من ذوات الحوافر تظهر هذه الأنماط المتناقضة في منطقة ماساي مارا في كينيا. أظهرت جميع الأنواع الأربعة قمم ولادة خلال الفترة المثلى المفترضة في موسم الأمطار المبكر. بالنسبة لحيوان النحل والامبالا، كانت ذروة الولادة منتشرة وولدت ذرية على مدار العام. على النقيض من ذلك، أظهر التوبي والخنزير الحربي تركيزًا موسميًا ضيقًا للولادات، مع قمع المفاهيم بمجرد انخفاض هطول الأمطار الشهري إلى ما دون مستوى العتبة. عزز ارتفاع هطول الأمطار في الموسم السابق وارتفاع الأمطار المبكرة في العام الحالي البقاء على قيد الحياة في مرحلة الشباب لجميع الأنواع باستثناء الإمبالا. تكشف النتائج التي توصلنا إليها كيف أن تباين هطول الأمطار الذي يؤثر على نمو العشب وبالتالي تغذية الحيوانات العاشبة يمكن أن يحكم الفينولوجيا الإنجابية لذوات الحوافر في خطوط العرض الاستوائية حيث يكون تباين طول اليوم ضئيلًا. يبدو أن الآلية الأساسية هي قمع المفاهيم بمجرد أن تصبح المكاسب الغذائية غير كافية. من خلال الاستجابة القريبة من التباين في هطول الأمطار خلال العام، فإن ذوات الحوافر في السافانا الاستوائية أقل عرضة للتأثر سلبًا بعواقب الاحترار العالمي على فينولوجيا الغطاء النباتي من ذوات الحوافر الشمالية التي تظهر تحكمًا دوريًا ضوئيًا أكثر صرامة في توقيت التكاثر.

We show that the variance of the number of simultaneous zeros of $m$ i.i.d. Gaussian random polynomials of degree $N$ in an open set $U \subset C^m$ with smooth boundary is asymptotic to $N^{m-1/2} ��_{mm} Vol(\partial U)$, where $��_{mm}$ is a universal constant depending only on the dimension $m$. We also give formulas for the variance of the volume of the set of simultaneous zeros in $U$ of $k Some computations are simplified and positivity of the coefficient of the leading term in the variance formula is shown for all codimensions. This article is a follow-up to math/0512652, which dealt with zero sets of codimension one. The original posting (v1) also contains results on smooth linear statistics and on random holomorphic functions on noncompact manifolds

More than half of the ribosomal protein operons in Escherichia coli are regulated by structures within the mRNA transcripts that interact with specific ribosomal proteins to inhibit further protein expression. This regulation is accomplished using a variety of mechanisms and the RNA structures responsible for regulation are often not conserved across bacterial phyla. A widely conserved mRNA structure preceding the ribosomal protein operon containing rpsF and rpsR (encoding S6 and S18) was recently identified through comparative genomics. Examples of this RNA from both E. coli and Bacillus subtilis were shown to interact in vitro with an S6:S18 complex. In this work, we demonstrate that in E. coli, this RNA structure regulates gene expression in response to the S6:S18 complex. β-galactosidase activity from a lacZ reporter translationally fused to the 5′ UTR and first nine codons of E. coli rpsF is reduced fourfold by overexpression of a genomic fragment encoding both S6 and S18 but not by overexpression of either protein individually. Mutations to the mRNA structure, as well as to the RNA-binding site of S18 and the S6–S18 interaction surfaces of S6 and S18, are sufficient to derepress β-galactosidase activity, indicating that the S6:S18 complex is the biologically active effector. Measurement of transcript levels shows that although reporter levels do not change upon protein overexpression, levels of the native transcript are reduced fourfold, suggesting that the mRNA regulator prevents translation and this effect is amplified on the native transcript by other mechanisms.

AbstractBackgroundMigrating birds experience weather conditions that change with time, which affect their decision to stop or resume migration. Soaring migrants are especially sensitive to changing weather conditions because they rely on the availability of environmental updrafts to subsidize flight. The timescale that local weather conditions change over is on the order of hours, while stopovers are studied at the daily scale, creating a temporal mismatch.MethodsWe used GPS satellite tracking data from four migratory Turkey Vulture (Cathartes aura) populations, paired with local weather data, to determine if the decision to stopover by migrating Turkey Vultures was in response to changing local weather conditions. We analyzed 174 migrations of 34 individuals from 2006 to 2019 and identified 589 stopovers based on variance of first passage times. We also investigated if the extent of movement activity correlated with average weather conditions experienced during a stopover, and report general patterns of stopover use by Turkey Vultures between seasons and across populations.ResultsStopover duration ranged from 2 h to more than 11 days, with 51 % of stopovers lasting < 24 h. Turkey Vultures began stopovers immediately in response to changes in weather variables that did not favor thermal soaring (e.g., increasing precipitation fraction and decreasing thermal updraft velocity) and their departure from stopovers was associated with improvements in weather that favored thermal development. During stopovers, proportion of activity was negatively associated with precipitation but was positively associated with temperature and thermal updraft velocity.ConclusionsThe rapid response of migrating Turkey Vultures to changing weather conditions indicates weather-avoidance is one of the major functions of their stopover use. During stopovers, however, the positive relationship between proportion of movement activity and conditions that promote thermal development suggests not all stopovers are used for weather-avoidance. Our results show that birds are capable of responding rapidly to their environment; therefore, for studies interested in external drivers of weather-related stopovers, it is essential that stopovers be identified at fine temporal scales.

Ribosome profiling (Ribo-seq) is a powerful technique for measuring protein translation; however, sampling errors and biological biases are prevalent and poorly understood. Addressing these issues, we present Scikit-ribo (https://github.com/schatzlab/scikit-ribo), an open-source analysis package for accurate genome-wide A-site prediction and translation efficiency (TE) estimation from Ribo-seq and RNA sequencing data. Scikit-ribo accurately identifies A-site locations and reproduces codon elongation rates using several digestion protocols (r = 0.99). Next, we show that the commonly used reads per kilobase of transcript per million mapped reads-derived TE estimation is prone to biases, especially for low-abundance genes. Scikit-ribo introduces a codon-level generalized linear model with ridge penalty that correctly estimates TE, while accommodating variable codon elongation rates and mRNA secondary structure. This corrects the TE errors for over 2,000 genes in S. cerevisiae, which we validate using mass spectrometry of protein abundances (r = 0.81), and allows us to determine the Kozak-like sequence directly from Ribo-seq. We conclude with an analysis of coverage requirements needed for robust codon-level analysis and quantify the artifacts that can occur from cycloheximide treatment.

Monitoring and interpreting sequential learner activities has the potential to improve adaptivity and personalization within educational environments. We present an approach based on the modeling of learners' problem solving activity sequences, and on the use of the models in targeted, and ultimately automated clustering, resulting in the discovery of new, semantically meaningful information about the learners. The approach is applicable at different levels: to detect pre-defined, well-established problem solving styles, to identify problem solving styles by analyzing learner behaviour along known learning dimensions, and to semi-automatically discover learning dimensions and concrete problem solving patterns. This article describes the approach itself, demonstrates the feasibility of applying it on real-world data, and discusses aspects of the approach that can be adjusted for different learning contexts. Finally, we address the incorporation of the proposed approach in the adaptation cycle, from data acquisition to adaptive system interventions in the interaction process.

The cyclic growth and decay of continental ice sheets can be reconstructed from the history of global sea level. Sea level is relatively well constrained for the Last Glacial Maximum (LGM, 26,500 to 19,000 y ago, 26.5 to 19 ka) and the ensuing deglaciation. However, sea-level estimates for the period of ice-sheet growth before the LGM vary by > 60 m, an uncertainty comparable to the sea-level equivalent of the contemporary Antarctic Ice Sheet. Here, we constrain sea level prior to the LGM by reconstructing the flooding history of the shallow Bering Strait since 46 ka. Using a geochemical proxy of Pacific nutrient input to the Arctic Ocean, we find that the Bering Strait was flooded from the beginning of our records at 46 ka until35.7-2.4+3.3ka. To match this flooding history, our sea-level model requires an ice history in which over 50% of the LGM’s global peak ice volume grew after 46 ka. This finding implies that global ice volume and climate were not linearly coupled during the last ice age, with implications for the controls on each. Moreover, our results shorten the time window between the opening of the Bering Land Bridge and the arrival of humans in the Americas.