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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Andela, Bouwe; Broetz, Bjoern; de Mora, Lee; Drost, Niels; +34 Authors

    ESMValCore: A community tool for pre-processing data from Earth system models in CMIP and running analysis scripts.

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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ NARCISarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Stork, Lise; Kuzniar, Arnold;

    The Semantic Field Book Annotator is a web application developed for domain experts to harvest structured annotations from field books, drawings and specimen labels of natural history collections. Users can draw bounding boxes over (zoomable) image scans of historical field notes, to which annotations can be attached. All metadata regarding an annotation event, annotation provenance, transcription and semantic interpretation of the text are stored in a knowledge base, which is accessible via a SPARQL endpoint and Web API.

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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Other ORP type . 2021
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ NARCISarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      Other ORP type . 2021
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Baccinelli, Walter; Moore, Candace Makeda;

    Added features page Added possibility to load .npy files as data input

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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ NARCISarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: van der Ent, Ruud J; Benedict, Imme Bo; Weijenborg, Chris; Cömert, Tolga; +3 Authors

    WAM2layers is an atmospheric moisture-tracking model that can be used to determine where precipitation originally evaporated (backtracking), or where evaporated moisture eventually ends up (forward tracking).

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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Stefan Verhoeven; Oscar Martinez Rubi; Arnold Kuzniar; Gijs van den Oord; +1 Authors

    Web service for the ahn-pointcloud-viewer web application. Ahn-point-cloud-viewer is a point cloud visualization for country sized point clouds. The web service has the following api endpoints: Compute the number of points in a selected area Create a laz file of the selection and send a mail to an end-user with download location of the generated laz file It uses a PostGIS database to approximate number of points in selected area.

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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Other ORP type . 2017
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Stefan Verhoeven; Albert J. Kooistra; Marton Vass; Ross McGuire; +1 Authors

    KNIME node to view molecules powered by webgl. Workflows using v1 molviewer nodes will need to replace them with the v2 molviewer nodes. Fixed Unable to show second pharmacophore (#31)

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ NARCISarrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Other ORP type . 2019
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ NARCISarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Verhoeven, Stefan; Weel, Berend;

    Automated launching of Jupyter notebooks based on parameters and a notebook template.

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    Other ORP type . 2018
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      Other ORP type . 2018
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Ranguelova, Elena; Bos, Patrick; Liu, Yang; Meijer, Christiaan; +2 Authors

    This is the version at the time of our JOSS paper submission. What's Changed create skeleton for joss paper by @gcroci2 in https://github.com/dianna-ai/dianna/pull/237 revisit joss skeleton by @gcroci2 in https://github.com/dianna-ai/dianna/pull/240 add getting started to readme by @cwmeijer in https://github.com/dianna-ai/dianna/pull/223 Add demo notebook to tutorials folder by @gcroci2 in https://github.com/dianna-ai/dianna/pull/260 update readme, refer to latest m1 issue by @cwmeijer in https://github.com/dianna-ai/dianna/pull/262 update .bib with citations by @gcroci2 in https://github.com/dianna-ai/dianna/pull/241 Update fair-software.yml by @jspaaks in https://github.com/dianna-ai/dianna/pull/269 Joss paper by @elboyran in https://github.com/dianna-ai/dianna/pull/267 add dependency (fixes #270) by @cwmeijer in https://github.com/dianna-ai/dianna/pull/274 add youtube movie demo to readme by @egpbos in https://github.com/dianna-ai/dianna/pull/275 LIME in demo fixed by using RGB values (0-255) by @egpbos in https://github.com/dianna-ai/dianna/pull/276 Full Changelog: https://github.com/dianna-ai/dianna/compare/v0.3.0...v0.4.0 Note about the version number. We skipped v0.4.0 because of issues while creating the release. This makes v0.4.1 the first release since 0.3.0.

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    Other ORP type . 2022
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    Authors: van Haren, Ronald; Camphuijsen, Jaro; Dzigan, Yifat; Drost, Niels; +12 Authors

    A command line interface to download ERA5 data from the Climate Data Store.

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    Authors: Spaaks, Jurriaan H.; Verhoeven, Stefan; Tjong Kim Sang, Erik; Diblen, Faruk; +7 Authors

    Command line tool to analyze compliance with the five recommendations for FAIR software from https://fair-software.eu.

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215 Research products
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    Authors: Andela, Bouwe; Broetz, Bjoern; de Mora, Lee; Drost, Niels; +34 Authors

    ESMValCore: A community tool for pre-processing data from Earth system models in CMIP and running analysis scripts.

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    Authors: Stork, Lise; Kuzniar, Arnold;

    The Semantic Field Book Annotator is a web application developed for domain experts to harvest structured annotations from field books, drawings and specimen labels of natural history collections. Users can draw bounding boxes over (zoomable) image scans of historical field notes, to which annotations can be attached. All metadata regarding an annotation event, annotation provenance, transcription and semantic interpretation of the text are stored in a knowledge base, which is accessible via a SPARQL endpoint and Web API.

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    Authors: Baccinelli, Walter; Moore, Candace Makeda;

    Added features page Added possibility to load .npy files as data input

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    Authors: van der Ent, Ruud J; Benedict, Imme Bo; Weijenborg, Chris; Cömert, Tolga; +3 Authors

    WAM2layers is an atmospheric moisture-tracking model that can be used to determine where precipitation originally evaporated (backtracking), or where evaporated moisture eventually ends up (forward tracking).

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    Authors: Stefan Verhoeven; Oscar Martinez Rubi; Arnold Kuzniar; Gijs van den Oord; +1 Authors

    Web service for the ahn-pointcloud-viewer web application. Ahn-point-cloud-viewer is a point cloud visualization for country sized point clouds. The web service has the following api endpoints: Compute the number of points in a selected area Create a laz file of the selection and send a mail to an end-user with download location of the generated laz file It uses a PostGIS database to approximate number of points in selected area.

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    Authors: Stefan Verhoeven; Albert J. Kooistra; Marton Vass; Ross McGuire; +1 Authors

    KNIME node to view molecules powered by webgl. Workflows using v1 molviewer nodes will need to replace them with the v2 molviewer nodes. Fixed Unable to show second pharmacophore (#31)

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    Authors: Verhoeven, Stefan; Weel, Berend;

    Automated launching of Jupyter notebooks based on parameters and a notebook template.

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    Authors: Ranguelova, Elena; Bos, Patrick; Liu, Yang; Meijer, Christiaan; +2 Authors

    This is the version at the time of our JOSS paper submission. What's Changed create skeleton for joss paper by @gcroci2 in https://github.com/dianna-ai/dianna/pull/237 revisit joss skeleton by @gcroci2 in https://github.com/dianna-ai/dianna/pull/240 add getting started to readme by @cwmeijer in https://github.com/dianna-ai/dianna/pull/223 Add demo notebook to tutorials folder by @gcroci2 in https://github.com/dianna-ai/dianna/pull/260 update readme, refer to latest m1 issue by @cwmeijer in https://github.com/dianna-ai/dianna/pull/262 update .bib with citations by @gcroci2 in https://github.com/dianna-ai/dianna/pull/241 Update fair-software.yml by @jspaaks in https://github.com/dianna-ai/dianna/pull/269 Joss paper by @elboyran in https://github.com/dianna-ai/dianna/pull/267 add dependency (fixes #270) by @cwmeijer in https://github.com/dianna-ai/dianna/pull/274 add youtube movie demo to readme by @egpbos in https://github.com/dianna-ai/dianna/pull/275 LIME in demo fixed by using RGB values (0-255) by @egpbos in https://github.com/dianna-ai/dianna/pull/276 Full Changelog: https://github.com/dianna-ai/dianna/compare/v0.3.0...v0.4.0 Note about the version number. We skipped v0.4.0 because of issues while creating the release. This makes v0.4.1 the first release since 0.3.0.

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    Authors: van Haren, Ronald; Camphuijsen, Jaro; Dzigan, Yifat; Drost, Niels; +12 Authors

    A command line interface to download ERA5 data from the Climate Data Store.

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    Authors: Spaaks, Jurriaan H.; Verhoeven, Stefan; Tjong Kim Sang, Erik; Diblen, Faruk; +7 Authors

    Command line tool to analyze compliance with the five recommendations for FAIR software from https://fair-software.eu.

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