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812 research outcomes, page 1 of 82
  • publication . Preprint . 2017
    Open Access English
    Authors:
    Alon Philosof; Natalya Yutin; José Flores-Uribe; Itai Sharon; Eugene V. Koonin; Oded Béjà;
    Persistent Identifiers
    Publisher: Cold Spring Harbor Laboratory
    Project: EC | PHOTOPHAGE (321647), EC | PHOTO.COMM (317184), TARA | Tara Oceans (2)

    AbstractMarine Group II Euryarchaeota (MGII) are among the most abundant microbes in the oceanic surface waters. So far, however, representatives of MGII have not been cultivated, and no viruses infecting these organisms have been described. Here we present complete gen...

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  • publication . Article . Preprint . 2018
    Open Access
    Authors:
    Lucas Czech; Alexandros Stamatakis;
    Publisher: Public Library of Science (PLoS)
    Country: Germany
    Project: TARA | Tara Oceans (2)

    1AbstractThe exponential decrease in molecular sequencing cost generates unprecedented amounts of data. Hence, scalable methods to analyze these data are required. Phylogenetic (or Evolutionary) Placement methods identify the evolutionary provenance of anonymous sequenc...

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  • publication . Article . 2017
    Open Access English
    Authors:
    Matsuoka, Atsushi; Boss, Emmanuel; Babin, Marcel; Karp-Boss, Lee; Hafez, Mark; Chekalyuk, Alex; Proctor, Christopher W.; Werdell, P. Jeremy; Bricaud, Annick;
    Persistent Identifiers
    Publisher: HAL CCSD
    Country: France
    Project: TARA | Tara Oceans (2)

    International audience; Light absorption of the colored fraction of dissolved organic matter (CDOM) is a dominant optical component of the Arctic Ocean (AO). Here we show Pan-Arctic characteristics of CDOM light absorption for various Arctic regions covering both coasta...

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  • publication . Preprint . 2020
    Open Access English
    Authors:
    Yuqing Yang; Xin Wang; Kaikun Xie; Congmin Zhu; Ning Chen; Ting Chen;
    Persistent Identifiers
    Publisher: Cold Spring Harbor Laboratory
    Project: TARA | Tara Oceans (2)

    AbstractIdentifying significant biological relationships or patterns is central to many metagenomic studies. Methods that estimate association networks have been proposed for this purpose, but they assume that associations are static, neglecting the fact that relationsh...

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  • publication . Preprint . 2019
    Open Access
    Authors:
    Saw, Jimmy H.W.; Nunoura, Takuro; Hirai, Miho; Takaki, Yoshihiro; Parsons, Rachel; Michelsen, Michelle; Longnecker, Krista; Kujawinski, Elizabeth B.; Stepanauskas, Ramunas; Landry, Zachary; ...
    Persistent Identifiers
    Publisher: bioRxiv
    Project: TARA | Tara Oceans (2), NSF | Collaborative research: U... (1441717), NSF | MRI: Acquisition of genom... (1335810), NSF | Dissolved Organic Matter ... (1154320)

    AbstractIt has been hypothesized that abundant heterotrophic ocean bacterioplankton in the SAR202 clade of the phylumChloroflexievolved specialized metabolism for the oxidation of organic compounds that are resistant to microbial degradation via common metabolic pathway...

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  • publication . Preprint . Article . 2019
    Open Access English
    Authors:
    Cuadrat, Rafael R. C.; Sorokina, Maria; Andrade, Bruno G.; Goris, Tobias; Dávila, Alberto M. R.;
    Persistent Identifiers
    Country: Brazil
    Project: TARA | Tara Oceans (2)

    Submitted by Sandra Infurna (sandra.infurna@ioc.fiocruz.br) on 2020-05-29T14:22:18Z No. of bitstreams: 1 AlbertoDÀvila_etal_IOC_2019.pdf: 399391 bytes, checksum: 13383d1bc270738ef6c0bb3ae6a1f84c (MD5) Approved for entry into archive by Sandra Infurna (sandra.infurna@ioc...

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  • publication . Article . 2020
    Open Access
    Authors:
    Alicia S. Arroyo; Romain Iannes; Eric Bapteste; Iñaki Ruiz-Trillo;
    Persistent Identifiers
    Publisher: Oxford University Press
    Country: France
    Project: TARA | Tara Oceans (2)

    The Holozoa clade comprises animals and several unicellular lineages (choanoflagellates, filastereans, and teretosporeans). Understanding their full diversity is essential to address the origins of animals and other evolutionary questions. However, they are poorly known...

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  • publication . Preprint . 2021
    Open Access English
    Authors:
    Paul Frémont; Marion Gehlen; Mathieu Vrac; Jade Leconte; Tom O. Delmont; Patrick Wincker; Daniele Iudicone; Olivier Jaillon;
    Persistent Identifiers
    Publisher: HAL CCSD
    Country: France
    Project: TARA | Tara Oceans (2)

    AbstractThe impact of climate change on diversity, functioning and biogeography of marine plankton remains a major unresolved issue. Here, niche theory is applied to plankton metagenomes of 6 size fractions, from viruses to meso-zooplankton, sampled during the Tara Ocea...

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  • publication . Article . Other literature type . 2019
    Open Access English
    Authors:
    Kedzierski, Mikaël; Villain, Jonathan; Falcou-Préfol, Mathilde; Kerros, Marie Emmanuelle; Henry, Maryvonne; Pedrotti, Maria Luiza; Bruzaud, Stéphane;
    Persistent Identifiers
    Publisher: Public Library of Science (PLoS)
    Country: France
    Project: TARA

    International audience; The study of microplastic pollution involves multidisciplinary analyses on a large number of microplastics. Therefore, providing an overview of plastic pollution is time consuming and, despite high throughput analyses, remains a major challenge. ...

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  • publication . Article . Preprint . 2018
    Open Access English
    Authors:
    Benjamin J. Tully;
    Publisher: Nature Publishing Group UK
    Project: TARA | Tara Oceans (2)

    Despite their discovery over 25 years ago, the Marine Group II Euryarchaea (MGII) remain a difficult group of organisms to study, lacking cultured isolates and genome references. The MGII have been identified in marine samples from around the world, and evidence support...

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812 research outcomes, page 1 of 82