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28 research outcomes, page 1 of 3
  • publication . Article . Preprint . 2020
    Open Access
    Authors:
    Jiang, Jue; Hu, Yu Chi; Tyagi, Neelam; Rimner, Andreas; Lee, Nancy; Deasy, Joseph O.; Berry, Sean; Veeraraghavan, Harini;
    Publisher: Institute of Electrical and Electronics Engineers (IEEE)
    Project: NIH | MOUSE GENETICS (2P30CA008748-43)

    Comment: This paper has been accepted by IEEE Transactions on Medical Imaging

  • publication . Preprint . 2019
    Open Access English
    Authors:
    Liu, Jingya; Cao, Liangliang; Akin, Oguz; Tian, Yingli;
    Project: NIH | MOUSE GENETICS (2P30CA008748-43), NSF | CHS: Medium: Collaborativ... (1400802)

    Comment: 15 pages, 8 figures, 5 tables, under review by Medical Image Analysis. arXiv admin note: substantial text overlap with arXiv:1906.03467

  • publication . Preprint . 2019
    Open Access English
    Authors:
    Li, Qiongge; Pasquini, Luca; Del Ferraro, Gino; Gene, Madeleine; Peck, Kyung K.; Makse, Hernán A.; Holodny, Andrei I.;
    Project: NSF | CRCNS: Targeted Stimulati... (1515022), NIH | MOUSE GENETICS (2P30CA008748-43), NIH | Planning and Evaluation (5U54CA137788-03), NIH | Supplement: Network Metho... (3R01EB022720-03S1)

    Pre-surgical language mapping with functional magnetic resonance imaging (fMRI) is routinely conducted to assist the neurosurgeon in preventing damage to brain regions responsible for language. Functional differences exist between the monolingual versus the bilingual br...

  • publication . Research . Preprint . 2019
    Open Access English
    Authors:
    Simpson, Amber L.; Antonelli, Michela; Bakas, Spyridon; Bilello, Michel; Farahani, Keyvan; van Ginneken, Bram; Kopp-Schneider, Annette; Landman, Bennett A.; Litjens, Geert; Menze, Bjoern; ...
    Project: NIH | MOUSE GENETICS (2P30CA008748-43), NIH | Modeling/Estimating brain... (7R01NS042645-02), NIH | Computer Aided Detection ... (1Z01CL040004-04), NIH | Cancer imaging phenomics ... (3U24CA189523-03S1)

    Semantic segmentation of medical images aims to associate a pixel with a label in a medical image without human initialization. The success of semantic segmentation algorithms is contingent on the availability of high-quality imaging data with corresponding labels provi...

  • publication . Preprint . 2017
    Open Access English
    Authors:
    Pouryahya, Maryam; Mathews, James; Tannenbaum, Allen;
    Project: NIH | MOUSE GENETICS (2P30CA008748-43), NIH | Neuroimaging Analysis Cen... (5P41EB015902-20), NIH | Characterizing the glymph... (7RF1AG053991-02), NIH | FUNCTIONAL MRI INFORMATIC... (5P41RR013218-09)

    In the present work, we study the properties of biological networks by applying analogous notions of fundamental concepts in Riemannian geometry and optimal mass transport to discrete networks described by weighted graphs. Specifically, we employ possible generalization...

  • publication . Preprint . 2019
    Open Access English
    Authors:
    Ho, David Joon; Yarlagadda, Dig V. K.; D'Alfonso, Timothy M.; Hanna, Matthew G.; Grabenstetter, Anne; Ntiamoah, Peter; Brogi, Edi; Tan, Lee K.; Fuchs, Thomas J.;
    Project: NIH | MOUSE GENETICS (2P30CA008748-43)

    Breast carcinoma is one of the most common cancers for women in the United States. Pathologic analysis of surgical excision specimens for breast carcinoma is important to evaluate the completeness of surgical excision and has implications for future treatment. This anal...

  • publication . Preprint . 2019
    Open Access English
    Authors:
    Häggström, Ida; Lin, Yizun; Li, Si; Krol, Andrzej; Xu, Yuesheng; Schmidtlein, C. Ross;
    Project: NIH | MOUSE GENETICS (2P30CA008748-43)

    Our aim was to enhance visual quality and quantitative accuracy of dynamic positron emission tomography (PET)uptake images by improved image reconstruction, using sophisticated sparse penalty models that incorporate both 2D spatial+1D temporal (3DT) information. We deve...

  • publication . Other literature type . Article . Preprint . 2018
    Open Access
    Authors:
    Zi Wang; Dali Wang; Chengcheng Li; Yichi Xu; Husheng Li; Zhirong Bao;
    Publisher: Oxford University Press (OUP)
    Project: NIH | Systematic Multi-scale An... (5R01GM097576-07), NIH | MOUSE GENETICS (2P30CA008748-43)

    Cell movement in the early phase of C. elegans development is regulated by a highly complex process in which a set of rules and connections are formulated at distinct scales. Previous efforts have shown that agent-based, multi-scale modeling systems can integrate physic...

  • publication . Preprint . Article . 2018
    Open Access English
    Authors:
    Engstrom, T. A.; Zhang, Teng; Lawton, A. K.; Joyner, A. L.; Schwarz, J. M.;
    Project: NIH | MOUSE GENETICS (2P30CA008748-43), NIH | Signaling pathways that r... (1R01NS092096-01), NIH | Role of granule neuron pr... (5F32NS086163-02), NIH | Engrailed genes and cereb... (5R37MH085726-09)

    Comment: version accepted by Physical Review X

  • publication . Preprint . 2018
    Open Access English
    Authors:
    Feinberg, Evan N.; Farimani, Amir Barati; Uprety, Rajendra; Hunkele, Amanda; Pasternak, Gavril W.; Majumdar, Susruta; Pande, Vijay S.;
    Project: NIH | Analgesics targeting trun... (5R33DA034106-04), NIH | MOLECULAR BIOPHYSICS TRAI... (2T32GM008294-11), NIH | MOUSE GENETICS (2P30CA008748-43)

    Comment: 28 pages, machine learning, computational biology, GPCRs, molecular dynamics, molecular docking, molecular simulation

28 research outcomes, page 1 of 3
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