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827 research outcomes, page 1 of 83
  • publication . Article . 2018
    Open Access English
    Authors:
    Vosseberg, Julian; Martijn, Joran; Ettema, Thijs J. G.;
    Persistent Identifiers
    Publisher: American Society for Microbiology
    Project: TARA | Tara Oceans (2), EC | PUZZLE_CELL (310039)

    The Tara Oceans Consortium has published various metagenomes of marine environmental samples. Here, we report a contig of 2.6 Mbp from the assembly of a sample collected near the Marquesas Islands in the Pacific Ocean, covering a nearly complete novel verrucomicrobial g...

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  • publication . Other literature type . Preprint . 2017
    Open Access
    Authors:
    Alon Philosof; Natalya Yutin; José Flores-Uribe; Itai Sharon; Eugene V. Koonin; Oded Béjà;
    Persistent Identifiers
    Publisher: Cold Spring Harbor Laboratory
    Project: EC | PHOTOPHAGE (321647), EC | PHOTO.COMM (317184), TARA | Tara Oceans (2)

    AbstractMarine Group II Euryarchaeota (MGII) are among the most abundant microbes in the oceanic surface waters. So far, however, representatives of MGII have not been cultivated, and no viruses infecting these organisms have been described. Here we present complete gen...

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  • publication . Preprint . Other literature type . 2019
    Open Access English
    Authors:
    Jimmy H. Saw; Takuro Nunoura; Miho Hirai; Yoshihiro Takaki; Rachel Parsons; Michelle Michelsen; Krista Longnecker; Elizabeth B. Kujawinski; Ramunas Stepanauskas; Zachary Landry; ...
    Persistent Identifiers
    Publisher: Cold Spring Harbor Laboratory
    Project: NSF | Collaborative research: U... (1441717), NSF | Dissolved Organic Matter ... (1154320), TARA | Tara Oceans (2), NSF | MRI: Acquisition of genom... (1335810)

    AbstractIt has been hypothesized that abundant heterotrophic ocean bacterioplankton in the SAR202 clade of the phylumChloroflexievolved specialized metabolism for the oxidation of organic compounds that are resistant to microbial degradation via common metabolic pathway...

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  • publication . Article . 2017
    Open Access English
    Authors:
    Jean-François Mangot; Ramiro Logares; Pablo Sánchez; Fran Latorre; Yoann Seeleuthner; Samuel Mondy; Michael E. Sieracki; Olivier Jaillon; Patrick Wincker; Colomban de Vargas; ...
    Persistent Identifiers
    Project: NSF | Diversity of marine proti... (1031049), EC | DYGEMAST (331190), TARA | Tara Oceans (2), EC | SINGEK (675752), ANR | OCEANOMICS (ANR-11-BTBR-0008)

    SPE BIOME GENOSOL INRA; International audience; Pico-sized eukaryotes play key roles in the functioning of marine ecosystems, but we still have a limited knowledge on their ecology and evolution. The MAST-4 lineage is of particular interest, since it is widespread in su...

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  • publication . Article . 2015
    Open Access English
    Authors:
    J. C. Gascard; Timo Vihma; R. Doscher;
    Persistent Identifiers
    Publisher: HAL CCSD
    Project: TARA | Tara Artic (1)

    DAMOCLES (Developing Arctic Modeling and Observing Capabilities for Long-term Environmental Studies) aimed at reducing the uncertainties in our understanding, modeling and forecasting of climate changes in the Arctic. Over the last 2–3 decades the Arctic has warmed more...

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  • publication . Conference object . 2015
    English
    Authors:
    Benoit, Gaëtan; Peterlongo, Pierre; Lavenier, Dominique; Lemaitre, Claire;
    Publisher: HAL CCSD
    Project: TARA | Tara Oceans (2)

    International audience; Comparative metagenomics aims to provide high-level information based on DNA material sequenced from different environments. The purpose is mainly to estimate proximity between two or more environmental sites at the genomic level. One way to esti...

  • publication . Article . 2014
    Open Access
    Authors:
    Mark V. Brown; Martin Ostrowski; Joseph J. Grzymski; Federico M. Lauro;
    Persistent Identifiers
    Publisher: Elsevier BV
    Project: ARC | The role of deep-sea micr... (DE120102610), TARA | Tara Oceans (2), ARC | Towards a predictive mode... (DP0988002)

    Marine microbial communities provide much of the energy upon which all higher trophic levels depend, particularly in open-ocean and oligotrophic systems, and play a pivotal role in biogeochemical cycling. How and why species are distributed in the global oceans, and whe...

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  • publication . Preprint . Other literature type . 2021
    Open Access English
    Authors:
    Paul Fremont; Marion Gehlen; Vrac M; Jade Leconte; Patrick Wincker; Daniele Iudicone; Olivier Jaillon;
    Persistent Identifiers
    Publisher: HAL CCSD
    Project: TARA | Tara Oceans (2)

    AbstractThe impact of climate change on diversity, functioning and biogeography of marine plankton is a major unresolved scientific issue. Here, niche theory is applied on plankton metagenomes sampled during the Tara Oceans expedition to derive pan-ocean geographical st...

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  • publication . Article . 2018
    Open Access English
    Authors:
    Enrico Ser-Giacomi; Lucie Zinger; Shruti Malviya; Colomban de Vargas; Eric Karsenti; Chris Bowler; Silvia De Monte;
    Publisher: HAL CCSD
    Project: NIH | ITP Workshop on Biologica... (1R25GM067110-01), NSF | Kavli Institute for Theor... (1125915), ANR | PSL (ANR-10-IDEX-0001), TARA | Tara Oceans (2)

    International audience; Marine plankton populate 70% of Earth's surface, providing the energy that fuels ocean food webs and contributing to global biogeochemical cycles. Plankton communities are extremely diverse and geographically variable, and are overwhelmingly comp...

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  • publication . Article . 2018
    Open Access
    Authors:
    Elaina D. Graham; John F. Heidelberg; Benjamin J. Tully;
    Persistent Identifiers
    Publisher: Springer Science and Business Media LLC
    Project: TARA | Tara Oceans (2)

    Aerobic anoxygenic phototrophs (AAnPs) are common in marine environments and are associated with photoheterotrophic activity. To date, AAnPs that possess the potential for carbon fixation have not been identified in the surface ocean. Using the Tara Oceans metagenomic d...

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827 research outcomes, page 1 of 83