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137 research outcomes, page 1 of 14
  • publication . Article . Software Paper . 2017
    Open Access
    Authors:
    Francois Nedelec;
    Publisher: Ubiquity Press, Ltd.

    Mathematical models in biology have many parameters, and sampling parameter values is necessary, for instance to identify robustness or sensitivities in the model, or simply calculate a phase diagram. We provide a universal program: Preconfig, that can be used within di...

  • publication . Software Paper . Article . 2017
    Open Access English
    Authors:
    Erick Peirson;
    Publisher: Ubiquity Press

    In the digital humanities, there is a constant need to turn images and PDF files into plain text to apply analyses such as topic modelling, named entity recognition, and other techniques. However, although there exist different solutions to extract text embedded in PDF ...

  • publication . Article . Software Paper . 2016
    Open Access English
    Authors:
    Thor Nygaard Markussen;
    Publisher: Ubiquity Press

    Studies of suspended particles and particle dynamics in aquatic environments increasingly rely on camera systems to characterize the particles. Numerous systems exist and all use different codes and practises to process the images from the systems. Here, a step-by-step ...

  • publication . Article . Software Paper . 2016
    Open Access English
    Authors:
    Joris Meurs;
    Publisher: Ubiquity Press

    This paper aimed to develop a standalone application for optimizing flow rates in liquid chromatography (LC), gas chromatography (GC) and supercritical fluid chromatography (SFC). To do so, Van Deemter’s equation, Knox’ equation and Golay’s equation were implemented in ...

  • publication . Article . Software Paper . 2020
    Open Access
    Authors:
    Alana Aragón Zülke; Violeta Gonzalez-Perez;
    Publisher: Ubiquity Press, Ltd.

    We present preparenovonix, a Python package that handles common issues encountered in data files generated with a range of software versions from the Novonix battery-testers.1 This package can also add extra information that makes easier coulombic counting and relating ...

  • publication . Article . Software Paper . 2019
    Open Access
    Authors:
    Chen, Zhangqi; Zhang, Qiaofu; Zhao, Ji-Cheng;
    Publisher: Ubiquity Press, Ltd.
    Project: NSF | DMREF: Design Knowledge B... (1333999)

    pydiffusion is a free and open-source Python library designed to solve diffusion problems for both single-phase and multi-phase binary systems. The key features of pydiffusion include fast simulation of multi-phase diffusion and extraction of diffusion coefficients from...

  • publication . Article . Software Paper . Other literature type . 2017
    Open Access
    Authors:
    Foo Cheung; Giovanna Fantoni; Maria Conner; Brian A. Sellers; Yuri Kotliarov; Julián Candia; Katherine Stagliano; Angélique Biancotto;
    Publisher: Ubiquity Press, Ltd.

    SOMAscan™ is a complex proteomic platform created by SomaLogic. Experimental data resulting from the assay is provided by SomaLogic in a proprietary text-based format called ADAT. This manuscript describes a user-friendly point and click open source, platform-independen...

  • publication . Article . Other literature type . Software Paper . 2019
    Open Access English
    Authors:
    Johannes Brenner; Giulio Genova; Giacomo Bertoldi; Georg Niedrist; Stefano Della Chiesa;
    Publisher: Ubiquity Press

    SWCalibrateR is a user-friendly web application. We designed SWCalibrateR to interactively estimate linear regression relationships of any couple of field data series. We specifically developed this toolbox to calibrate soil moisture sensors based on gravimetric soil mo...

  • publication . Software Paper . Article . Other literature type . 2018
    Open Access English
    Authors:
    Pete R Jones;
    Publisher: Ubiquity Press

    QuestPlus is a MATLAB implementation of the QUEST+ adaptive psychometric method. It provides a rapid and flexible method of estimating the parameters of a psychophysical model, and is also capable of advising the user on the most appropriate stimuli to present, and on w...

  • publication . Software Paper . Article . 2020
    Open Access English
    Authors:
    Foo Cheung; The CHI Consortium;
    Publisher: Ubiquity Press

    This manuscript introduces a user-friendly, point and click open source and platform-independent software tool that aids the graphical representation of experimental studies. A graphical summary can give a high-level view of a study and represent in one illustration the...

137 research outcomes, page 1 of 14
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