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177 research outcomes, page 1 of 18
  • publication . Software Paper . Article . 2016
    Open Access English
    Authors:
    Christopher Beckham; Mark Hall; Eibe Frank;
    Publisher: Ubiquity Press

    WekaPyScript is a package for the machine learning software WEKA that allows learning algorithms and preprocessing methods for classification and regression to be written in Python, as opposed to WEKA’s implementation language, Java. This opens up WEKA to its machine le...

  • publication . Software Paper . Article . Other literature type . 2017
    Open Access English
    Authors:
    Joseph Hamman;
    Publisher: Ubiquity Press
    Project: WT

     xarray is an open source project and Python package that provides a toolkit and data structures for N-dimensional labeled arrays. Our approach combines an application programing interface (API) inspired by pandas with the Common Data Model for self-described scientific...

  • publication . Software Paper . Preprint . Article . 2017
    Open Access English
    Authors:
    Ryan Henderson; Rasmus Rothe;
    Publisher: Ubiquity Press

    Picasso is a free open-source (Eclipse Public License) web application written in Python for rendering standard visualizations useful for analyzing convolutional neural networks. Picasso ships with occlusion maps and saliency maps, two visualizations which help reveal i...

  • publication . Other literature type . Article . Software Paper . 2016
    Open Access
    Authors:
    Onogi, Akio; Iwata, Hiroyoshi;
    Publisher: Ubiquity Press, Ltd.

    Genome-wide regression using a number of genome-wide markers as predictors is now widely used for genome-wide association mapping and genomic prediction. We developed novel software for genome-wide regression which we named VIGoR (variational Bayesian inference for geno...

  • publication . Article . Other literature type . Software Paper . 2017
    Open Access English
    Authors:
    Richard Otis; Zi-Kui Liu;
    Publisher: Ubiquity Press

    The pycalphad software package is a free and open-source Python library for designing thermodynamic models, calculating phase diagrams and investigating phase equilibria using the CALPHAD method. It provides routines for reading thermodynamic databases and solving the m...

  • publication . Software Paper . Article . 2016
    Open Access English
    Authors:
    Andy Stock;
    Publisher: Ubiquity Press

    This paper describes an easy-to-use open source software tool implementing a commonly used additive model (Halpern et al., 'Science', 2008) for mapping human impacts on marine ecosystems. The tool has been used to map the potential for cumulative human impacts in Arctic...

  • publication . Software Paper . Article . 2013
    Open Access English
    Authors:
    Sergey Fomel; Paul Sava; Ioan Vlad; Yang Liu; Vladimir Bashkardin;
    Publisher: Ubiquity Press

    <span class="s1">The Madagascar software package is designed for analysis of large-scale multidimensional data, such as those occurring in exploration geophysics. Madagascar provides a framework for reproducible research. By “reproducible research” we refer to the disci...

  • publication . Article . Software Paper . Other literature type . 2017
    Open Access
    Authors:
    Rackauckas, Christopher; Nie, Qing;
    Publisher: Ubiquity Press, Ltd.
    Project: NSF | Graduate Research Fellows... (1321846), NSF | Differentiation and Strat... (1161621), NIH | Develop new mathematical ... (5P50GM076516-07), NIH | Mathematical, Computation... (2T32EB009418-06A1)

    DifferentialEquations.jl is a package for solving differential equations in Julia. It covers discrete equations (function maps, discrete stochastic (Gillespie/Markov) simulations), ordinary differential equations, stochastic differential equations, algebraic differentia...

  • publication . Software Paper . Article . Other literature type . 2015
    Open Access English
    Authors:
    Beth Plale;
    Publisher: Ubiquity Press
    Project: NSF | DataNet Full Proposal: Su... (0940824)

    Data provenance captured from scientific applications is a critical precursor to data sharing and reuse. For researchers wanting to repurpose data, it is a source of information about the lineage and attribution of the data and this is needed in order to establish trust...

  • publication . Other literature type . Article . Software Paper . 2019
    Open Access
    Authors:
    Julian Stieg; Peter Marks; Lasse Gerrits;
    Publisher: Ubiquity Press, Ltd.
    Project: NWO | Craving Simplicity in Pub... (2300161532)

    UN-CODE is a web-based tool for structuring and visualizing collective decision-making processes using qualitative, case-based data. It offers a database management tool and visualization method in one. The structure of the database and the visualizations derive from a ...

177 research outcomes, page 1 of 18
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