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2,002 Data sources

  • FAIRsharing

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  • The Dimensions database is a scholarly database containing research articles, citations, books, chapters, and conference proceedings, as well as awarded grants, patents, clinical trials, policy documents, datasets and altmetric information. The free version includes a searchable publications index and links to all the other different entities. The subscription version includes further faceting, further analytical capabilities, and searchable indices of the non-publication content.

  • The Human Protein Reference Database represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome.

  • DatumKB is a freely accessible database of experimental results involving the function and regulation of human proteins in cultured cells. The results are manually curated from biological research literature using a shorthand language and stored as datums.

  • The Yale University Open Data Access (YODA) Project at the Center for Outcomes Research and Evaluation advocates for the responsible sharing of clinical research data. The Project is committed to open science and data transparency, and supports research attempting to produce concrete benefits to patients, the medical community, and society as a whole. Through experience and input from the public and stakeholders, the YODA Project has iteratively developed a model to make data available to researchers in a sustainable way, in which data sharing becomes a part of the clinical research enterprise of the future. The mission of the YODA Project is to not only increase access to clinical research data, but to promote its use to generate new knowledge.

  • Selectome is a database of positive selection, based on a branch-site likelihood test. Release 6 of Selectome includes all gene trees from Ensembl for Primates and Glires, as well as a large set of vertebrate gene trees.

  • HALO is a Gulfstream G-550 aircraft specifically equipped with numerous in situ and remote sensing instruments. It allows to study important scientific questions with regard to atmospheric chemistry, atmospheric physics, climate research, satellite validations, and Earth system observations. It enables the university-based atmospheric and Earth system research community in Germany in partnership with colleagues from the national research centers to perform state-of-the-art science utilizing HALO as a unique infrastructure.

  • A database for storing MultiCellDS files. In the future, MultiCellDB will include a curated library of quality-controlled digital cell lines, starting with digital representations of breast cancer (MCF7, MCF10A, MDA-MB-231), lung cancer (HCC827, H1975), and metastatic colon cancer (HCT-116 and patient-derived lines) cell lines. The user interface and API are under active development.

  • The Bacterial protein tYrosine Kinase database (BYKdb) contains computer-annotated BY-kinase sequences. The database web interface allows static and dynamic queries and provides integrated analysis tools including sequence annotation.

  • HadCRUT4 is a gridded dataset of global historical surface temperature anomalies relative to a 1961-1990 reference period. Data are available for each month since January 1850, on a 5 degree grid. The dataset is a collaborative product of the Met Office Hadley Centre and the Climatic Research Unit at the University of East Anglia.

  • Continuous automated benchmarking of computational protein structure prediction methods (and model quality estimation techniques). CAMEO assessment is based on blind predictions for weekly pre-released targets from PDB. Benchmarking results are made available as reference data for methods development.

2,002 Data sources
  • The Dimensions database is a scholarly database containing research articles, citations, books, chapters, and conference proceedings, as well as awarded grants, patents, clinical trials, policy documents, datasets and altmetric information. The free version includes a searchable publications index and links to all the other different entities. The subscription version includes further faceting, further analytical capabilities, and searchable indices of the non-publication content.

  • The Human Protein Reference Database represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome.

  • DatumKB is a freely accessible database of experimental results involving the function and regulation of human proteins in cultured cells. The results are manually curated from biological research literature using a shorthand language and stored as datums.

  • The Yale University Open Data Access (YODA) Project at the Center for Outcomes Research and Evaluation advocates for the responsible sharing of clinical research data. The Project is committed to open science and data transparency, and supports research attempting to produce concrete benefits to patients, the medical community, and society as a whole. Through experience and input from the public and stakeholders, the YODA Project has iteratively developed a model to make data available to researchers in a sustainable way, in which data sharing becomes a part of the clinical research enterprise of the future. The mission of the YODA Project is to not only increase access to clinical research data, but to promote its use to generate new knowledge.

  • Selectome is a database of positive selection, based on a branch-site likelihood test. Release 6 of Selectome includes all gene trees from Ensembl for Primates and Glires, as well as a large set of vertebrate gene trees.

  • HALO is a Gulfstream G-550 aircraft specifically equipped with numerous in situ and remote sensing instruments. It allows to study important scientific questions with regard to atmospheric chemistry, atmospheric physics, climate research, satellite validations, and Earth system observations. It enables the university-based atmospheric and Earth system research community in Germany in partnership with colleagues from the national research centers to perform state-of-the-art science utilizing HALO as a unique infrastructure.

  • A database for storing MultiCellDS files. In the future, MultiCellDB will include a curated library of quality-controlled digital cell lines, starting with digital representations of breast cancer (MCF7, MCF10A, MDA-MB-231), lung cancer (HCC827, H1975), and metastatic colon cancer (HCT-116 and patient-derived lines) cell lines. The user interface and API are under active development.

  • The Bacterial protein tYrosine Kinase database (BYKdb) contains computer-annotated BY-kinase sequences. The database web interface allows static and dynamic queries and provides integrated analysis tools including sequence annotation.

  • HadCRUT4 is a gridded dataset of global historical surface temperature anomalies relative to a 1961-1990 reference period. Data are available for each month since January 1850, on a 5 degree grid. The dataset is a collaborative product of the Met Office Hadley Centre and the Climatic Research Unit at the University of East Anglia.

  • Continuous automated benchmarking of computational protein structure prediction methods (and model quality estimation techniques). CAMEO assessment is based on blind predictions for weekly pre-released targets from PDB. Benchmarking results are made available as reference data for methods development.

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