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Test dataset for ProteinID

Name: Test dataset for ProteinID
Keywords: proteomics, test data

Research datakeyboard_double_arrow_right Dataset 15 Apr 2017Publisher:ZenodoFunded by:EC | PRIME-XS, EC | PROTEOMEXCHANGE

Authors: Vaudel, Marc; Martens, Lennart; Sigloch, Florian Christoph;

doi: 10.5281/zenodo.892005 , 10.5281/zenodo.546301

Test dataset for ProteinID

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Abstract

This dataset can be used as an input for peptide and protein ID workflows. It was originally published in Vaudel et al., 2014, Proteomics (https://www.ncbi.nlm.nih.gov/pubmed/24678044). A detailed description of the "qExactive01819" sample can be found on PRIDE (https://www.ebi.ac.uk/pride/archive/projects/PXD000674). The provided FASTA protein database is the uniprot human reference database with the Crap database added. The second database additionally contains the most common mycoplasma contaminants. Both databases are also available with reversed peptide sequences attached as decoys (tag: "DECOY_"). A detailed description of the provided databases can be found here: https://galaxyproject.github.io/training-material/topics/proteomics/tutorials/database-handling/tutorial.html

Related Organizations

University of Freiburg
Germany
Ghent University
Belgium

Keywords

proteomics, test data

1 Research products, page 1 of 1

Shedding light on black boxes in protein identification
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