<script type="text/javascript">
<!--
document.write('<div id="oa_widget"></div>');
document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=undefined&type=result"></script>');
-->
</script>

COPY SCRIPT

For further information contact us at helpdesk@openaire.eu

2.8M SNPs Chinese Spring RefSeq v2.1 dataset

Research datakeyboard_double_arrow_right Dataset 21 Apr 2023 English Publisher:Zenodo

Authors: Akshaya Vasudevan; Sylvie Cloutier;

doi: 10.5281/zenodo.7852689 , 10.5281/zenodo.7852690

2.8M SNPs Chinese Spring RefSeq v2.1 dataset

- Summary
- Subjects
- Metrics

Abstract

VCF file of 2,799,166 single nucleotide polymorphism (SNP) markers positioned onto the Chinese Spring reference assembly RefSeq v2.1 developed by the International Wheat Genome Sequence Consortium (IWGSC; Zhu et al., 2021). These SNPs were lifted from the 1,000 wheat exome project, originally positioned onto RefSeq v1.0 (He et al., 2019). The SNP projection from RefSeq v1.0 onto RefSeq v2.1 was accomplished using LiftOff (Shumate and Salzberg, 2021). References He F, Pasam R, Shi F, Kant S, Keeble-Gagnere G, Kay P, Forrest K, Fritz A, Hucl P, Wiebe K, et al: Exome sequencing highlights the role of wild-relative introgression in shaping the adaptive landscape of the wheat genome. Nature Genetics 2019, 51:896-904. Shumate A, Salzberg SL: Liftoff: accurate mapping of gene annotations. Bioinformatics 2021, 37:1639-1643. Zhu T, Wang L, Rimbert H, Rodriguez JC, Deal KR, De Oliveira R, Choulet F, Keeble-Gagnère G, Tibbits J, Rogers J, et al: Optical maps refine the bread wheat Triticum aestivum cv. Chinese Spring genome assembly. The Plant Journal 2021, 107:303-314..

Keywords

RefSeq v2.1, Triticum aestivum, Chinese Spring, SNPs

Impact byBIP!

	citations This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	0
	popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.	Average
	influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	Average
	impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.	Average