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image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao ZENODOarrow_drop_down
image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
ZENODO
Dataset . 2022
Data sources: Datacite
ZENODO
Dataset . 2022
Data sources: ZENODO
ZENODO
Dataset . 2022
Data sources: ZENODO
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Authors: Giudice Luca;
Abstract

This repository contains the data and the code used in the StellarPath project and software. A folder can contain the starting raw data in "data", the R scripts in order of execution (op1, op2 ..) and the "output" folder that contains the final processed data of each operation. "External/MIRWALK" contains the processing of the mirwalk database to extract miRNA-targets interactions "External/NETDX_OGD" contains the operations performed to classify the OGD dataset with NetDx "External/NETDX_TCGA" contains the operations performed to classify the TCGA datasets with NetDx interactions "External/NETWORK" contains the preparation of the gene-gene interaction network "External/PATHWAYS" contains the assempbly of the database of pathways from literature "External/RNA-RNA" contains the assembly of the pathways involving non-coding RNA elements "External/TCGA" contains the extraction and preparation of the TCGA datasets "External/CLL" contains the preparation of the CLL datasets "SP1.9" contains the code used to run StellarPath on TCGA and OGD datasets, plus the code to plot the results included in the publication "StellarPath" contains the R package at the moment of the submission "OGD_tot_RNA" fastq sequences of the total RNA sequencing of the WT samples can be found here https://www.biorxiv.org/content/10.1101/2023.01.24.525136v1 "OGD_miRNA" fastq sequences of the small RNA sequencing of the WT samples can be found here https://www.biorxiv.org/content/10.1101/2023.01.24.525136v1

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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