research data . Dataset . 2021

CIViCmine

Lever, Jake;
Open Access
  • Published: 02 Sep 2021
  • Publisher: Zenodo
Abstract
This describes the output files for the CIViCmine project. These files are loaded directly by the CIViCmine viewer. The code for this viewer is available in the CIViCmine Github repo if you want to run it independently. Each file is a tab-delimited file with a header, no comments and no quoting. You likely want civicmine_collated.tsv if you just want the list of cancer biomarkers. If you want the supporting sentences, look at civicmine_sentences.tsv. You can use the matching_id column to connect the two files. If you want to dig further and are okay with a higher false positive rate, look at civicmine_unfiltered.tsv. civicmine_collated.tsv: This contains the can...
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