research data . Dataset . 2021

Functional Association of Prokaryotic Virus Orthologous Groups: A Proof of Concept - Data

Pappas, Nikolaos; Dutilh, E. Bas;
Open Access English
  • Published: 03 Mar 2021
  • Publisher: Zenodo
Abstract
Raw data required to reproduce all intermediate results and thereby the final predictions. These are used in the accompanying snakemake pipeline https://git.science.uu.nl/papanikos/pvogs_function. This archive is automatically downloaded and files are extracted when executing the pipeline. You can also download and extract the files manually. Included files are: data/genomes/phages_refseq.fasta : A multifasta file with all phage genomes available on RefSeq , on 14/01/2020 data/interactions/interactions.txt: A PSI-MI TAB file containing all interactions from IntAct, retrieved on 28/05/2019 data/pvogs/all.hmm : All hmmer profiles for pVOGs, retrieved from http://...
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Open Access
Zenodo
Dataset . 2021
Provider: Datacite
Open Access
Zenodo
Dataset . 2021
Provider: Zenodo
Open Access
Zenodo
Dataset . 2021
Provider: Datacite
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