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Tissue-mimics example datasets for Icy protocols

Name: Tissue-mimics example datasets for Icy protocols
Keywords: light-sheet microscopy, SPIM, bioimage analysis, Icy software

Research datakeyboard_double_arrow_right Dataset 27 Jan 2021Publisher:Zenodo

Authors: Lorenzo, Corinne; Andilla, Jordi;

doi: 10.5281/zenodo.3903398 , 10.5281/zenodo.3903397

Tissue-mimics example datasets for Icy protocols

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Abstract

This upload contains three image datasets to test the Icy protocols P1 to P3 and plugin metroloSPIM described in Andilla, J., Jorand, R., Olarte, O. et al. Imaging tissue-mimic with light sheet microscopy: A comparative guideline. Sci Rep 7, 44939 (2017). https://doi.org/10.1038/srep44939 MCTS_H2B-FP.tif: tissue-mimics example dataset to test Icy protocol P1 – Detect tissue mimics and crop 3D sub-volume MCTS_H2B-FP_crop.tif: crop of MCTS_H2B-FP.tif (tissue-mimics example dataset) to test Icy protocol P2 – SNR and contrast measurements MCTS_Beads.tif: fluorescent beads example dataset to test Icy protocol P3 – Characterize the PSF from beads in 3D

{"references": ["Andilla, J., Jorand, R., Olarte, O. et al. Imaging tissue-mimic with light sheet microscopy: A comparative guideline. Sci Rep 7, 44939 (2017). https://doi.org/10.1038/srep44939"]}

Related Organizations

University of Toulouse
France
French National Centre for Scientific Research
France

Keywords

light-sheet microscopy, SPIM, bioimage analysis, Icy software

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