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Eyebright species maintenance (scripts and data accompanying Becher et al., Plant Communications)

Name: Eyebright species maintenance (scripts and data accompanying Becher et al., Plant Communications)
Keywords: genome assembly, Euphrasia, k-mers

Research datakeyboard_double_arrow_right Dataset 28 Apr 2020 English Zenodo UKRI | Evolutionary consequences..., UKRI | Ecological speciation and..., UKRI | Hybridization and the ori...

Authors: Becher, Hannes; Brown, Max R; Powell, Gavin; Metherell, Chris; Riddiford Nick J; Twyford, Alex D;

doi: 10.5281/zenodo.3774489 , 10.5281/zenodo.3774488

Eyebright species maintenance (scripts and data accompanying Becher et al., Plant Communications)

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Abstract

This gzipped TAR ball contains data and scripts related to the study on Fair Isle eyebrights by Hannes Becher, Max R. Brown, Gavin Powell, Chris Metherell, Nick J. Riddiford, and Alex D. Twyford, submitted to Plant Communications. Data: genome assembly of Euphrasia arctica, variant call files of the "tetraploid" and "conserved" sets of scaffolds, per-individual k-mer spectra, mapping depths, etc. Scripts: R scripts for the analysis of plant trait data, heterozygosity, ect.; an ipython notebook for the analysis of variant data, and a Mathematica notebook with the derivation of the formulae used to fit pop gen parameters to k-mer spectra.

Keywords

genome assembly, Euphrasia, k-mers

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	citations This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	0
	popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.	Average
	influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	Average
	impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.	Average

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visibility	views	113
download	downloads	9K

	citations This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	0
	popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.	Average
	influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	Average
	impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.	Average

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Funded by

UKRI| Evolutionary consequences of facultative plant parasitism, UKRI| Ecological speciation and host adaptation in a parasitic plant, UKRI| Hybridization and the origin of novel taxa in Euphrasia