research data . Dataset . 2020

iMGMC - integrated Mouse Gut Metagenomic Catalog

Lesker, Till Robin; Strowig, Till;
Open Access English
  • Published: 31 Jan 2020
  • Publisher: Zenodo
Abstract
Creation of an new mouse gut gene catalog with special features: more diverse samples from different studies (12 Vendors incl. wild mice and various gut locations) clustering-free approach: all-in-one assembly, keeping track of each ORF to contigs to bins higher taxonomic resolution and more accuracy by using contigs for annotation 16S rRNA gene integration via linkage to bins expansion by 20,927 MAGs from sample-wise assembly of 871 mouse gut metagenomic samples, representing 1,296 species Code used: https://github.com/tillrobin/iMGMC The vast complexity of host-associated microbial ecosystems requires host-specific reference catalogs to survey the functions an...
Subjects
free text keywords: mouse gut, metagenome, gene catalog, Metagenome-assembled genomes (MAGs)
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Open Access
Zenodo
Dataset . 2020
Provider: Datacite
Open Access
Zenodo
Dataset . 2020
Provider: Zenodo
Open Access
Zenodo
Dataset . 2020
Provider: Datacite
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