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Cryoem Models And Associated Data Submitted To The 2015/2016 Emdatabank Model Challenge

Authors: Lawson, Catherine L.; Kryshtafovych, Andriy; Chiu, Wah; Adams, Paul; Brünger, Axel; Kleywegt, Gerard; Patwardhan, Ardan; +37 Authors

Cryoem Models And Associated Data Submitted To The 2015/2016 Emdatabank Model Challenge

Abstract

Files and metadata associated with the EMDataBank/Unified Data Resource for 3DEM 2015/2016 Models Challenge hosted at challenges.emdatabank.org are deposited. All members of the Scientific Community--at all levels of experience--were invited to participate as Challengers, and/or as Assessors. Eight recently determined target structures were selected for the challenge. All of the maps were archived in the EM Data Bank (EMDB; http://emdatabank.org). In total 16 Challengers created 106 models and uploaded their results with associated details. In the zip files, each entry is represented in a folder containing the original deposition upload (deposited_EM.pdb), initial processing at RCSB/Rutgers (deposited_EM_edited.pdb, maxit.cif, maxit.cif.pdb) and final model version evaluated (model-compare.pdb) at UC Davis (http://model-compare.emdatabank.org). This model challenge was one of two community-wide challenges sponsored by EMDataBank in 2015/2016 to critically evaluate 3DEM methods that are coming into use, with the ultimate goal of developing validation criteria associated with every 3DEM map and map-derived model.

{"references": ["Henderson et al (2012) Outcome of the first electron microscopy validation task force meeting. doi:10.1016/j.str.2011.12.014", "Lawson et al (2016) EMDataBank unified data resource for 3DEM. doi:10.1093/nar/gkv1126"]}

The 2015/2016 Model Challenge was supported by the US National Institutes of Health / National Institute for General Medical Sciences (NIH/NIGMS) Under Grant Number R01 GM079429 to Wah Chiu (PI).

Keywords

cryoEM, validation, https://meshb.nlm.nih.gov/record/ui?name=Imaging,%20Three%20Dimensional, cryo electron microscopy, benchmark, https://meshb.nlm.nih.gov/record/ui?name=Cryoelectron%20Microscopy, challenge, https://meshb.nlm.nih.gov/record/ui?name=Databases,%20Protein, https://meshb.nlm.nih.gov/record/ui?ui=D008958, https://meshb.nlm.nih.gov/record/ui?name=Microscopy,%20Electron, https://meshb.nlm.nih.gov/record/ui?name=Benchmarking

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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