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ZENODO
Dataset . 2023
License: CC BY
Data sources: ZENODO; Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2024
License: CC BY
Data sources: ZENODO; Datacite
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
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Phylogenetics: back to basics dataset

Authors: Burke, Melissa; Charleston, Michael; Taranto, Adam;

Phylogenetics: back to basics dataset

Abstract

This dataset is associated with the Galaxy Training Network tutorial "Phylogenetics: back to basics". It contains a subset of anolis lizard DNA sequences, from Jackman, Larson, de Queiroz & Losos (Phylogenetic Relationships and Tempo of Early Diversfication in Anolis Lizards; Systematic Biology 1999 48(2):254-285; https://doi.org/10.1080/106351599260283). DNA sequences were obtained from Genbank. The sequences are from the mitochondrial NADH dehydrogenase subunit 2 gene (ND2) and five transfer RNA (tRNA) genes, with an average sequence length of 1419.109 and a range of [1329,1727]. We are using a small set of sequences because phylogenetic estimation on many sequences is computationally very intensive, and can take weeks of time even on a high-performance computer. It is not uncommon for a phylogenetic analysis to span hundreds, or even thousands, of taxa. Files in this record: anolis-raw.fst : FASTA file of raw, unaligned sequences This Galaxy Training Network tutorial ‘Phylogenetics: back to basics’ was developed by Professor Michael Charleston from the University of Tasmania in collaboration with Australian BioCommons. Contact: training@biocommons.org.au Version notes: anolis-raw.fst file updated to remove blank line at the beginning of the file. 

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
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Average
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