research data . Dataset . 2021

AMPSphere : the worldwide survey of prokaryotic antimicrobial peptides

Santos-Júnior, Célio Dias; Schmidt, Thomas S.B.; Fullam, Anthony; Duan, Yiqian; Bork, Peer; Zhao, Xing-Ming; Coelho, Luis Pedro;
Open Access English
  • Published: 01 Jan 2021
  • Publisher: Zenodo
Abstract
<p>&nbsp;</p> <p><strong>INTRODUCTION</strong></p> <p>AMPSphere is a comprehensive catalog of antimicrobial peptides predicted using Macrel (DOI: <a href="https://peerj.com/articles/10555/">10.7717/peerj.10555</a>) from 63,410 public metagenomes, <a href="http://progenomes.embl.de/">ProGenomes v2.2 database</a> (82,400 high-quality microbial genomes), and c.a. 4k non-whitelisted microbial genomes from NCBI.</p> <p>&nbsp;</p> <p><strong>GENERATION</strong></p> <p>Peptides were predicted using Macrel. Singleton peptides were removed, except those with a direct hit to the <a href="http://dramp.cpu-bioinfor.org/">DRAMP database</a>.</p> <p>Redundant peptides were hi...
Subjects
free text keywords: antimicrobial peptides, metagenomics, progenomes, AMPSphere, macrel
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Zenodo
Dataset . 2021
Provider: Zenodo
Zenodo
Dataset . 2021
Provider: Zenodo
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