research data . Dataset . 2017

Framework and resource for more than 11,000 gene-transcript-protein-reaction associations in human metabolism

Ryu, Jae Yong; Kim, Hyun Uk; Lee, Sang Yup;
Open Access
  • Published: 28 May 2017
  • Publisher: Zenodo
Abstract
<ul> <li>Eight versions of COBRA-compliant SBML files are available for each Recon 2M.1 and Recon 2M.2 depending on the use of: MNXref versus BiGG IDs; Entrez gene IDs (GPR associations) versus Ensembl transcript IDs versus RefSeq transcript IDs versus UCSC transcript IDs (TPR associations for the last three database IDs).</li> <li>892 personal GEMs (only T-GEMs) built with Recon 2.2</li> <li>1,784 personal GEMs (both P-GEMs and T-GEMs) built with Recon 2M.1</li> <li>892 personal GEMs (only T-GEMs) built with Recon 2M.2</li> </ul> <p> </p> <p><strong>Publication</strong></p> <p>Jae Yong Ryu<sup>1</sup>, Hyun Uk Kim<sup>1</sup> &amp; Sang Yup Lee<sup>*</sup>. Fra...
Subjects
free text keywords: Human genome-scale metabolic model, Recon, Gene-transcript-protein-reaction associations (GeTPRA), Protein isoform, Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Molecular Biology, Neuroscience, Developmental Biology, Marine Biology, Cancer, Science Policy, Hematology, 110309 Infectious Diseases, Plant Biology, Computational Biology, 80699 Information Systems not elsewhere classified
Communities
Science and Innovation Policy Studies
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Dataset . 2017
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Dataset . 2017
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Dataset . 2017
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