research data . Dataset . 2017

Simulated data for "Spot-On: robust model-based analysis of single-particle tracking experiments"

Hansen, Anders Sejr; Woringer, Maxime; Grimm, Jonathan B; Lavis, Luke D; Tjian, Robert; Darzacq, Xavier;
Open Access
  • Published: 25 Jul 2017
  • Publisher: Zenodo
Abstract
<p><strong>Generation of simulated data</strong></p> <p>To systematically evaluate the performance of Spot-On as well as other common analysis tools such as MSD<sub>i</sub> and vbSPT, we considered a comprehensive set of 3480 realistic SPT simulations spanning the range of plausible dynamics. The simulations were performed using simSPT, which is freely available at GitLab: https://gitlab.com/tjian-darzacq-lab/simSPT. The simulation methods are described in detail at GitLab. A full description of the parameters which allows exact reproduction of the simulations is available together with the data (see Data Availability section). Briefly, we parameterized simSPT t...
Subjects
free text keywords: Biochemistry, Genetics, 69999 Biological Sciences not elsewhere classified, 80699 Information Systems not elsewhere classified, simulations 4 um.tar.bz 2, Data Availability section, HiLo beam, 100000 in-focus trajectories, CSV, simSPT, SPT, dataset, 4 µ m nucleus 20 um.tar.bz 2, 20 µ m nucleus, HiLo beam width, MSD, 8 µ m diameter, data
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Dataset . 2017
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Dataset . 2017
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Dataset . 2017
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Dataset . 2017
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