research data . Dataset . 2020

Simulated pairs of nucleotide sequences for testing (alignment-free) genome distance estimate methods

Criscuolo Alexis;
Open Access
  • Published: 17 Sep 2020
  • Publisher: Zenodo
Abstract
<p>This repository contains 24,000 pairs of nucleotide sequences (and associated parameters) that have been simulated for testing alignment-free genome distance estimates. Given an evolutionary distance <em>d</em> varying from 0.05 to 1.00 nucleotide substitutions per character (step = 0.05), the program <a href="http://abacus.gene.ucl.ac.uk/software/indelible/"><em>INDELible</em></a> was used to simulate the evolution of 200 nucleotide sequence pairs with <em>d</em> substitution events per character under the models GTR and GTR+&Gamma;. Each model was adjusted with three different equilibrium frequencies:</p> <ul> <li><em>f</em><sub>1</sub>: equal frequencies, ...
Subjects
free text keywords: simulation, genomes
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Zenodo
Dataset . 2020
Provider: Datacite
Zenodo
Dataset . 2020
Provider: Datacite
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