Genome Assemblies For "Versatile Genome Assembly Evaluation With Quast-Lg"

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Alla Mikheenko ; Andrey Prjibelski ; Vladislav Saveliev ; Dmitry Antipov ; Alexey Gurevich (2018)

<p>Supplementary data for&nbsp;A. Mikheenko, A. Prjibelski, V. Saveliev, D. Antipov, A. Gurevich.&nbsp;Versatile genome assembly evaluation with QUAST-LG.&nbsp;ISMB 2018 PROCEEDINGS (<em>Bioinformatics </em>journal)</p> <p>Reference genomes of</p> <ol> <li><em>Saccharomyces cerevisiae </em>(yeast)&nbsp;version&nbsp;R64-1-1&nbsp;</li> <li><em>Caenorhabditis&nbsp;elegans&nbsp;</em>(worm)&nbsp;version&nbsp;WBcel235</li> <li><em>Drosophila&nbsp;melanogaster&nbsp;</em>(fruit fly) version&nbsp;BDGP6</li> </ol> <p>And<em> de novo</em> genome assemblies of</p> <ol> <li>Yeast_PB (<em>S. cerevisiae</em>, genome size: 12.1 Mb): Canu, FALCON, Flye, MaSuRCA,&nbsp;Miniasm (from Illumina pair-ends&nbsp;and&nbsp;PacBio SMRT)</li> <li>Yeast_NP (<em>S. cerevisiae</em>, genome size: 12.1 Mb):&nbsp;Canu, Flye, MaSuRCA,&nbsp;Miniasm (from Illumina pair-ends&nbsp;and Oxford Nanopore)</li> <li>Worm_PB (<em>C. elegans</em>, genome size:&nbsp;100.3 Mb):&nbsp;Canu, FALCON, Flye, MaSuRCA,&nbsp;Miniasm (from Illumina pair-ends&nbsp;and&nbsp;PacBio SMRT)</li> <li>Fly_MP (<em>D. melanogaster</em>,&nbsp;genome size:&nbsp;137.6 Mb): ABySS2, MaSuRCA,&nbsp;Meraculous, Platanus, SOAPdenovo2, SPAdes (from Illumina pair-ends&nbsp;and&nbsp;mate-pairs)</li> <li>Human_MP (<em>H. sapiens</em>, genome size: 3.1 Gb): UpperBound assembly only (from Illumina pair-ends&nbsp;and&nbsp;mate-pairs)</li> <li>Human_NP (<em>H. sapiens</em>, genome size: 3.1 Gb): UpperBound assembly only (from Illumina pair-ends&nbsp;and&nbsp;Oxford Nanopore)</li> </ol> <p>Each pack (items 1-4) is accompanied with the upper bound&nbsp;assembly created with QUAST-LG (for computing theoretical limits on assembly correctness and completeness for a particular genome and set of reads). For more information, interactive QUAST-LG reports, and links to <em>de novo</em> assemblies of the human datasets please visit&nbsp;http://cab.spbu.ru/software/quast-lg/ or write to&nbsp;<em>quast.support@cab.spbu.ru.</em></p>
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