Comparison of RAxML and FastTree's log likelihoods, and the agreement of FastTree with RAxML's well-supported splits, for large genuine alignments.

Price, Morgan N.; S. Dehal, Paramvir; Arkin, Adam P.;

<p>We ran RAxML with the fast convergence option. All values for COGs are averages over seven families. Log likelihoods for all topologies were computed with RAxML using and GTR or JTT. Global bootstrap values are from using the standard bootstrap with RAxML 7.0.4 (fro... View more
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