Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh)

Bianco, Luca; Cestaro, Alessandro; James Sargent, Daniel; Banchi, Elisa; Derdak, Sophia; Di Guardo, Mario; Salvi, Silvio; Jansen, Johannes; Viola, Roberto; Gut, Ivo; Laurens, Francois; Chagné, David; Velasco, Riccardo; van de Weg, Eric; Troggio, Michela;
  • Publisher: Figshare
  • Identifiers: doi: 10.1371/journal.pone.0110377
  • Subject: Biological Sciences | 20 K SNPs | IRSC 8 K SNP array | crop germplasm | genomic regions | paralogous sequence variants | Illumina Infinium array | 1 cM intervals | Genomic Selection | allelic variation | SNP selection | 400 Kbps | fp | 11 entries | germplasm sets | Whole Genome Genotyping Array | crab apple species | IRSC 8 K array | fruit quality traits | 20 K Single Nucleotide Polymorphism | Marker Assisted Selection | medium density array | Broad genome coverage | Linkage disequilibrium

<div><p>High-density SNP arrays for genome-wide assessment of allelic variation have made high resolution genetic characterization of crop germplasm feasible. A medium density array for apple, the IRSC 8<b> </b>K SNP array, has been successfully developed and used for s... View more
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