scPerturb Single-Cell Perturbation Data: RNA and protein h5ad files
scPerturb Single-Cell Perturbation Data: RNA and protein h5ad files
Collection of h5ad files for RNA and protein single-cell perturbation datasets on scPerturb.org. For the associated publication, see https://www.nature.com/articles/s41592-023-02144-y. H5ad files were created using scanpy 1.9.1, using gzip compression.
Version notes: 1.4 adds more RNA datasets, corrects errors in SrivatsanTrapnell2020_sciplex3 and ShifrutMarson2018
- Humboldt-Universität zu Berlin Germany
- Harvard Medical School United States
- University of Edinburgh United Kingdom
- Dana-Farber Cancer Institute United States
- Harvard University United States
Data engineering and data science, Single-cell, Genomics and transcriptomics, Bioinformatic methods development, Data management and data science not elsewhere classified, Proteomics and metabolomics, ATAC-seq, RNA-seq, Perturbation
Data engineering and data science, Single-cell, Genomics and transcriptomics, Bioinformatic methods development, Data management and data science not elsewhere classified, Proteomics and metabolomics, ATAC-seq, RNA-seq, Perturbation
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