Indocyanine Dyes Approach Free Rotation at the 3′ Terminus of A‑RNA: A Comparison with the 5′ Terminus and Consequences for Fluorescence Resonance Energy Transfer

Audiovisual UNKNOWN
Milas, Peker; Gamari, Ben D.; Parrot, Louis; Krueger, Brent P.; Rahmanseresht, Sheema; Moore, James; Goldner, Lori S.;
(2013)
  • Publisher: Figshare
  • Related identifiers: doi: 10.1021/jp311071y.s002, doi: 10.1021/jp311071y.s001, doi: 10.1021/jp311071y.s003
  • Subject: Molecular Biology | intramolecular distances | Biotechnology | results show | correlation time | indocarbocyanine dyes Cy 3 | donor lifetimes | orientation factor | Space Science | dye configurations | Fluorescence Resonance Energy TransferCyanine dyes | MD | fluorescence lifetimes | Biophysics | RNA duplex | Cy 5 | Developmental Biology | linker position | Cy 3 | Physiology | terminal base | fluorescence resonance energy transfer | Monte Carlo modeling | Medicine | Indocyanine Dyes Approach Free Rotation | Computational Biology | configuration space | FRET signal | linker dynamics | Biochemistry | donor lifetime | dye photophysics | measure intramolecular distances
    • FOR: 29999 Physical Sciences not elsewhere classified | 39999 Chemical Sciences not elsewhere classified

Cyanine dyes are widely used to study the folding and structural transformations of nucleic acids using fluorescence resonance energy transfer (FRET). The extent to which FRET can be used to extract inter- and intramolecular distances has been the subject of... View more
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