research data . Dataset . 2017

Framework and resource for more than 11,000 gene-transcript-protein-reaction associations in human metabolism

Name: Framework and resource for more than 11,000 gene-transcript-protein-reaction associations in human metabolism
Keywords: Human genome-scale metabolic model, Recon, Gene-transcript-protein-reaction associations (GeTPRA), Protein isoform, Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Molecular Biology, Neuroscience, Developmental Biology, Marine Biology, Cancer, Science Policy, Hematology, 110309 Infectious Diseases, Plant Biology, Computational Biology, 80699 Information Systems not elsewhere classified

Ryu, Jae Yong; Kim, Hyun Uk; Lee, Sang Yup;

Open Access

Published: 28 May 2017

Publisher: Zenodo

Summary
Related research

Abstract

<ul> <li>Eight versions of COBRA-compliant SBML files are available for each Recon 2M.1 and Recon 2M.2 depending on the use of: MNXref versus BiGG IDs; Entrez gene IDs (GPR associations) versus Ensembl transcript IDs versus RefSeq transcript IDs versus UCSC transcript IDs (TPR associations for the last three database IDs).</li> <li>892 personal GEMs (only T-GEMs) built with Recon 2.2</li> <li>1,784 personal GEMs (both P-GEMs and T-GEMs) built with Recon 2M.1</li> <li>892 personal GEMs (only T-GEMs) built with Recon 2M.2</li> </ul> Publication Jae Yong Ryu1, Hyun Uk Kim1 & Sang Yup Lee*. Fra...

doi: 10.5281/zenodo.583326 , 10.5281/zenodo.599876

Subjects

free text keywords: Human genome-scale metabolic model, Recon, Gene-transcript-protein-reaction associations (GeTPRA), Protein isoform, Biochemistry, Medicine, Microbiology, Cell Biology, Genetics, Molecular Biology, Neuroscience, Developmental Biology, Marine Biology, Cancer, Science Policy, Hematology, 110309 Infectious Diseases, Plant Biology, Computational Biology, 80699 Information Systems not elsewhere classified

Communities

Science and Innovation Policy Studies

Download fromView all 4 versions