2,406 Data sources

US

Black Abolitionist Archive

Thematic Repository United States Compatibility:Not yet registeredPartners:UDM

Website URL: https://libraries.udmercy.edu/archives/special-collections/?collectionSet=all&collectionCode=baa

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OASIS
Data Repository United States, Pakistan Compatibility:Not yet registeredPartners:Mental Illness and Neuroscience Discovery Institute, Washington University School of Medicine, Department of Neurology, Charles F. and Joanne Knight Alzheimer's Disease Research Center, Alzheimer's Association, NIH, HHMI +2 partners Life Sciences, Neurosciences, Medicine
Mental Illness and Neuroscience Discovery Institute,
Washington University School of Medicine, Department of Neurology, Charles F. and Joanne Knight Alzheimer's Disease Research Center,
Alzheimer's Association,
NIH,
HHMI,
NRG,
JSMF
re3data: r3d100012182
re3data: r3d100012182
Website URL: https://www.oasis-brains.org/
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BearWorks

Institutional Repository United States Compatibility:Not yet registeredPartners:MSU

Website URL: https://bearworks.missouristate.edu

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Folkstreams

Thematic Repository United States Compatibility:Not yet registeredPartners:Ibiblio: The publics library and digital archive

Website URL: https://www.folkstreams.net/

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Depository Trust & Clearing Corporation Data Services
Data Repository United States Compatibility:Not yet registeredPartners:DTCC Humanities and Social Sciences, Economics, Business Administration
DTCC
re3data: r3d100013603
re3data: r3d100013603
Website URL: https://www.dtcc.com/repository-otc-data
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Gene Regulatory Network Database
Data Repository United States Compatibility:Not yet registeredPartners:Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, USA Life Science, Pharmacogenomics, Biological network analysis
Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, USA
doi: 10.25504/fairsharing.9f8852
doi: 10.25504/fairsharing.9f8852
Website URL: https://www.grand.networkmedicine.org
Gene regulation plays a fundamental role in shaping tissue identity, function, and response to perturbation. Regulatory processes are controlled by complex networks of interacting elements, including transcription factors, miRNAs and their target genes. The structure of these networks helps to determine phenotypes and can ultimately influence the development of disease or response to therapy. We developed GRAND (https://grand.networkmedicine.org) as a database for computationally-inferred, context-specific gene regulatory network models that can be compared between biological states, or used to predict which drugs produce changes in regulatory network structure. The database includes 12 468 genome-scale networks covering 36 human tissues, 28 cancers, 1378 unperturbed cell lines, as well as 173 013 TF and gene targeting scores for 2858 small molecule-induced cell line perturbation paired with phenotypic information. GRAND allows the networks to be queried using phenotypic information and visualized using a variety of interactive tools. In addition, it includes a web application that matches disease states to potentially therapeutic small molecule drugs using regulatory network properties.
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Reciprocal Net
Data Repository United States Compatibility:Not yet registeredPartners:NSF, NSDL, IUMSC, Reciprocal Net Partners Natural Sciences, Molecular Chemistry, Inorganic Molecular Chemistry
NSF,
NSDL,
IUMSC,
Reciprocal Net Partners
re3data: r3d100010767
re3data: r3d100010767
Website URL: http://www.reciprocalnet.org/
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Grand Challenge Data Collection
Data Repository United States Compatibility:Not yet registeredPartners:Carnegie Mellon University, Qualiy of Life Technologies Center, NSF, Carnegie Mellon University, Robotics Institute Humanities and Social Sciences, Engineering Sciences, Computer Science
Carnegie Mellon University, Qualiy of Life Technologies Center,
NSF,
Carnegie Mellon University, Robotics Institute
re3data: r3d100012191
re3data: r3d100012191
Website URL: http://kitchen.cs.cmu.edu/
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Clinical Knowledgebase
Data Repository United States Compatibility:Not yet registeredPartners:Jackson Laboratory Genomics, Biomedical Science, Preclinical Studies
Jackson Laboratory
doi: 10.25504/fairsharing.e5y0j0
doi: 10.25504/fairsharing.e5y0j0
Website URL: https://jax.org/ckb
The Jackson Laboratory Clinical Knowledgebase (CKB) is a semi-automated/manually curated database of gene/variant annotations, therapy knowledge, diagnostic/prognostic information, and clinical trials related to oncology. CKB not only contains current information on the protein effect of somatic gene variants, but also connects the variant to targeted therapies through an efficacy evidence annotation. In addition, CKB captures clinical trial patient eligibility criteria that include genomic alterations (genotype-specific). The public access version of CKB encompasses 82 commonly known driver genes. Users can search CKB via gene, gene variants, drug, drug class, indication, and clinical trials. The web-based version of CKB is designed to interrogate the knowledgebase for specific data attributes while also enabling a robust browse like feature when the desired content is unknown.
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SeedMe
Data Repository United States Compatibility:Not yet registeredPartners:SDSC, NSF Life Sciences, Agriculture, Forestry, Horticulture and Veterinary Medicine, Natural Sciences
SDSC,
NSF
re3data: r3d100012420
re3data: r3d100012420
Website URL: https://www.seedme.org/
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2,406 Data sources

download

Black Abolitionist Archive

Thematic Repository United States Compatibility:Not yet registeredPartners:UDM

Website URL: https://libraries.udmercy.edu/archives/special-collections/?collectionSet=all&collectionCode=baa

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OASIS
Data Repository United States, Pakistan Compatibility:Not yet registeredPartners:Mental Illness and Neuroscience Discovery Institute, Washington University School of Medicine, Department of Neurology, Charles F. and Joanne Knight Alzheimer's Disease Research Center, Alzheimer's Association, NIH, HHMI +2 partners Life Sciences, Neurosciences, Medicine
Mental Illness and Neuroscience Discovery Institute,
Washington University School of Medicine, Department of Neurology, Charles F. and Joanne Knight Alzheimer's Disease Research Center,
Alzheimer's Association,
NIH,
HHMI,
NRG,
JSMF
re3data: r3d100012182
re3data: r3d100012182
Website URL: https://www.oasis-brains.org/
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BearWorks

Institutional Repository United States Compatibility:Not yet registeredPartners:MSU

Website URL: https://bearworks.missouristate.edu

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Folkstreams

Thematic Repository United States Compatibility:Not yet registeredPartners:Ibiblio: The publics library and digital archive

Website URL: https://www.folkstreams.net/

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Depository Trust & Clearing Corporation Data Services
Data Repository United States Compatibility:Not yet registeredPartners:DTCC Humanities and Social Sciences, Economics, Business Administration
DTCC
re3data: r3d100013603
re3data: r3d100013603
Website URL: https://www.dtcc.com/repository-otc-data
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Gene Regulatory Network Database
Data Repository United States Compatibility:Not yet registeredPartners:Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, USA Life Science, Pharmacogenomics, Biological network analysis
Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, USA
doi: 10.25504/fairsharing.9f8852
doi: 10.25504/fairsharing.9f8852
Website URL: https://www.grand.networkmedicine.org
Gene regulation plays a fundamental role in shaping tissue identity, function, and response to perturbation. Regulatory processes are controlled by complex networks of interacting elements, including transcription factors, miRNAs and their target genes. The structure of these networks helps to determine phenotypes and can ultimately influence the development of disease or response to therapy. We developed GRAND (https://grand.networkmedicine.org) as a database for computationally-inferred, context-specific gene regulatory network models that can be compared between biological states, or used to predict which drugs produce changes in regulatory network structure. The database includes 12 468 genome-scale networks covering 36 human tissues, 28 cancers, 1378 unperturbed cell lines, as well as 173 013 TF and gene targeting scores for 2858 small molecule-induced cell line perturbation paired with phenotypic information. GRAND allows the networks to be queried using phenotypic information and visualized using a variety of interactive tools. In addition, it includes a web application that matches disease states to potentially therapeutic small molecule drugs using regulatory network properties.
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Reciprocal Net
Data Repository United States Compatibility:Not yet registeredPartners:NSF, NSDL, IUMSC, Reciprocal Net Partners Natural Sciences, Molecular Chemistry, Inorganic Molecular Chemistry
NSF,
NSDL,
IUMSC,
Reciprocal Net Partners
re3data: r3d100010767
re3data: r3d100010767
Website URL: http://www.reciprocalnet.org/
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Grand Challenge Data Collection
Data Repository United States Compatibility:Not yet registeredPartners:Carnegie Mellon University, Qualiy of Life Technologies Center, NSF, Carnegie Mellon University, Robotics Institute Humanities and Social Sciences, Engineering Sciences, Computer Science
Carnegie Mellon University, Qualiy of Life Technologies Center,
NSF,
Carnegie Mellon University, Robotics Institute
re3data: r3d100012191
re3data: r3d100012191
Website URL: http://kitchen.cs.cmu.edu/
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Clinical Knowledgebase
Data Repository United States Compatibility:Not yet registeredPartners:Jackson Laboratory Genomics, Biomedical Science, Preclinical Studies
Jackson Laboratory
doi: 10.25504/fairsharing.e5y0j0
doi: 10.25504/fairsharing.e5y0j0
Website URL: https://jax.org/ckb
The Jackson Laboratory Clinical Knowledgebase (CKB) is a semi-automated/manually curated database of gene/variant annotations, therapy knowledge, diagnostic/prognostic information, and clinical trials related to oncology. CKB not only contains current information on the protein effect of somatic gene variants, but also connects the variant to targeted therapies through an efficacy evidence annotation. In addition, CKB captures clinical trial patient eligibility criteria that include genomic alterations (genotype-specific). The public access version of CKB encompasses 82 commonly known driver genes. Users can search CKB via gene, gene variants, drug, drug class, indication, and clinical trials. The web-based version of CKB is designed to interrogate the knowledgebase for specific data attributes while also enabling a robust browse like feature when the desired content is unknown.
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SeedMe
Data Repository United States Compatibility:Not yet registeredPartners:SDSC, NSF Life Sciences, Agriculture, Forestry, Horticulture and Veterinary Medicine, Natural Sciences
SDSC,
NSF
re3data: r3d100012420
re3data: r3d100012420
Website URL: https://www.seedme.org/
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US

Black Abolitionist Archive

OASIS

BearWorks

Folkstreams

Depository Trust & Clearing Corporation Data Services

Gene Regulatory Network Database

Reciprocal Net

Grand Challenge Data Collection

Clinical Knowledgebase

SeedMe

Black Abolitionist Archive

OASIS

BearWorks

Folkstreams

Depository Trust & Clearing Corporation Data Services

Gene Regulatory Network Database

Reciprocal Net

Grand Challenge Data Collection

Clinical Knowledgebase

SeedMe

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