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2,384 Data sources

  • FAIRsharing

  • OpenBiodiv utilizes semantic publishing workflows, text mining, common standards, ontology modelling and graph database technologies to establish a robust infrastructure for creating and managing a Biodiversity Knowledge Graph. OpenBiodiv encompasses data extracted from full-text article XMLs published by Pensoft and taxonomic treatments extracted by Plazi from journals of other publishers. The data from both sources are converted to RDF and are integrated in a graph database which contains the OpenBiodiv-O ontology and a RDF version of the GBIF taxonomic backbone. OpenBiodiv provides the following services: XML-to-RDF conversion workflow and software for JATS TaxPub XML versions of journal articles RDF conversion of taxonomic hierarchies in CSV (example: GBIF taxonomic backbone) A triple store of close to one billion triples of facts and metadata extracted from literature SPARQL endpoint, accessible for regular queries and federated queries with other domain-specific or generic endpoints Predefined SPARQL queries reflecting different research questions. Within BiCIKL, OpenBiodiv will be developed to provide a LOD version of data liberated from the literature to make them interoperable with other data infrastructures throughout the biodiversity data life cycle.

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  • In 2007, ISKME launched OER Commons, its digital public library and collaboration platform, informed by the organization's pioneering efforts in knowledge management and educational innovation. OER Commons offers a comprehensive infrastructure for curriculum experts and instructors at all levels to identify high-quality OER and collaborate around their adaptation, evaluation, and use to address the needs of teachers and learners. Diving into OER Commons is an exciting opportunity to collaborate with other educators and learners, at the forefront of a new educational era.

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  • ProbOnto, is an ontology-based knowledge base of probability distributions, featuring more than 150 uni- and multivariate distributions with their defining functions, characteristics, relationships and re-parameterization formulas. It can be used for model annotation and facilitates the encoding of distribution-based models, related functions and quantities. ProbOnto is both an ontology and a knowledge base, however its primary focus is the knowledge base.

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  • The Yale University Open Data Access (YODA) Project at the Center for Outcomes Research and Evaluation advocates for the responsible sharing of clinical research data. The Project is committed to open science and data transparency, and supports research attempting to produce concrete benefits to patients, the medical community, and society as a whole. Through experience and input from the public and stakeholders, the YODA Project has iteratively developed a model to make data available to researchers in a sustainable way, in which data sharing becomes a part of the clinical research enterprise of the future. The mission of the YODA Project is to not only increase access to clinical research data, but to promote its use to generate new knowledge.

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  • The Overview of Medical Research in the Netherlands (OMON), previously the Dutch Trial Register (LTR), is a register in which a part of the clinical studies in The Netherlands are registered. OMON currently includes all research from the old National Trial Register (NTR) and the CCMO register published on ToetsingOnline.nl. The Central Committee on Research Involving Human Subjects (CCMO) manages the register. CCMO is accountable to the Ministry of Health, Welfare and Sport and is a non-profit organisation. OMON is an official data provider to the International Clinical Trial Registry Platform (ICTRP) of the World Health Organization (WHO).

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  • FINDbase worldwide is an online resource documenting frequencies of clinically relevant genomic variants, namely pathogenic variants leading to inherited disorders and pharmacogenomic biomarkers, in various populations worldwide. The initial data came from previously published reports as well as from unpublished information contributed from individual researchers prior of publication.

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  • As a database, miRTarBase has accumulated more than fifty thousand miRNA-target interactions (MTIs), which are collected by manually surveying pertinent literature after data mining of the text systematically to filter research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments. While containing the largest amount of validated MTIs, the miRTarBase provides the most updated collection by comparing with other similar, previously developed databases.

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  • The Vivli data repository provides a global data-sharing and analytics platform serving all elements of the international research community. It is focused on sharing individual participant-level data from completed clinical trials to serve the international research community. Vivli acts as a neutral broker between data contributor and data user and the wider data sharing community. Vivli is a non-profit organization focused on data sharing and analysis. Vivli provides managed access for human subject clinical research data. At a minimum, Vivli will make data available for researchers for 10 years, unless they are contractually unable to do so. On an ongoing basis, Vivli evaluates its data holdings with regard to maintaining access and reserves the right to discontinue the distribution of a data collections when deemed appropriate.When materials are deaccessioned, the data are no longer publicly accessible at Vivli, although they may still be preserved in Vivli’s storage vault. Because digital files are assigned a persistent digital object identifier (DOI), the study description is still available to view, but is not searchable through Vivli. Web crawlers are instructed to ignore the descriptions (via the robots exclusion protocol). For more information about Vivli’s policy, please contact Vivli at support@vivli.org It provides a no-charge period for data only available within their secure research environment. There are costs after the no-charge time period ends. Vivli supports managed access as well as embargoing generally and during peer review. Vivli is funded via grants and member fees.

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  • In order to meet the needs of research data management for Peking University. The PKU library cooperate with the NSFC-PKU data center for management science, PKU science and research department, PKU social sciences department to jointly launch the Peking University Open Research Data Platform. PKU Open research data provides preservation, management and distribution services for research data. It encourage data owner to share data and data users to reuse data.

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  • IBISBA is a European infrastructure that uniquely produces translational R&D&I services to an international community of industrial biotechnology stakeholders. IBISBA simplifies access to advanced multidisciplinary services that accelerate end-to-end bioprocess development and contributes to the delivery of low carbon, low environmental footprint technologies for a wide variety of market sectors. IBISBAHub is the repository of IBISBA-related projects and data

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2,384 Data sources
  • OpenBiodiv utilizes semantic publishing workflows, text mining, common standards, ontology modelling and graph database technologies to establish a robust infrastructure for creating and managing a Biodiversity Knowledge Graph. OpenBiodiv encompasses data extracted from full-text article XMLs published by Pensoft and taxonomic treatments extracted by Plazi from journals of other publishers. The data from both sources are converted to RDF and are integrated in a graph database which contains the OpenBiodiv-O ontology and a RDF version of the GBIF taxonomic backbone. OpenBiodiv provides the following services: XML-to-RDF conversion workflow and software for JATS TaxPub XML versions of journal articles RDF conversion of taxonomic hierarchies in CSV (example: GBIF taxonomic backbone) A triple store of close to one billion triples of facts and metadata extracted from literature SPARQL endpoint, accessible for regular queries and federated queries with other domain-specific or generic endpoints Predefined SPARQL queries reflecting different research questions. Within BiCIKL, OpenBiodiv will be developed to provide a LOD version of data liberated from the literature to make them interoperable with other data infrastructures throughout the biodiversity data life cycle.

    more_vert
  • In 2007, ISKME launched OER Commons, its digital public library and collaboration platform, informed by the organization's pioneering efforts in knowledge management and educational innovation. OER Commons offers a comprehensive infrastructure for curriculum experts and instructors at all levels to identify high-quality OER and collaborate around their adaptation, evaluation, and use to address the needs of teachers and learners. Diving into OER Commons is an exciting opportunity to collaborate with other educators and learners, at the forefront of a new educational era.

    more_vert
  • ProbOnto, is an ontology-based knowledge base of probability distributions, featuring more than 150 uni- and multivariate distributions with their defining functions, characteristics, relationships and re-parameterization formulas. It can be used for model annotation and facilitates the encoding of distribution-based models, related functions and quantities. ProbOnto is both an ontology and a knowledge base, however its primary focus is the knowledge base.

    more_vert
  • The Yale University Open Data Access (YODA) Project at the Center for Outcomes Research and Evaluation advocates for the responsible sharing of clinical research data. The Project is committed to open science and data transparency, and supports research attempting to produce concrete benefits to patients, the medical community, and society as a whole. Through experience and input from the public and stakeholders, the YODA Project has iteratively developed a model to make data available to researchers in a sustainable way, in which data sharing becomes a part of the clinical research enterprise of the future. The mission of the YODA Project is to not only increase access to clinical research data, but to promote its use to generate new knowledge.

    more_vert
  • The Overview of Medical Research in the Netherlands (OMON), previously the Dutch Trial Register (LTR), is a register in which a part of the clinical studies in The Netherlands are registered. OMON currently includes all research from the old National Trial Register (NTR) and the CCMO register published on ToetsingOnline.nl. The Central Committee on Research Involving Human Subjects (CCMO) manages the register. CCMO is accountable to the Ministry of Health, Welfare and Sport and is a non-profit organisation. OMON is an official data provider to the International Clinical Trial Registry Platform (ICTRP) of the World Health Organization (WHO).

    more_vert
  • FINDbase worldwide is an online resource documenting frequencies of clinically relevant genomic variants, namely pathogenic variants leading to inherited disorders and pharmacogenomic biomarkers, in various populations worldwide. The initial data came from previously published reports as well as from unpublished information contributed from individual researchers prior of publication.

    more_vert
  • As a database, miRTarBase has accumulated more than fifty thousand miRNA-target interactions (MTIs), which are collected by manually surveying pertinent literature after data mining of the text systematically to filter research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments. While containing the largest amount of validated MTIs, the miRTarBase provides the most updated collection by comparing with other similar, previously developed databases.

    more_vert
  • The Vivli data repository provides a global data-sharing and analytics platform serving all elements of the international research community. It is focused on sharing individual participant-level data from completed clinical trials to serve the international research community. Vivli acts as a neutral broker between data contributor and data user and the wider data sharing community. Vivli is a non-profit organization focused on data sharing and analysis. Vivli provides managed access for human subject clinical research data. At a minimum, Vivli will make data available for researchers for 10 years, unless they are contractually unable to do so. On an ongoing basis, Vivli evaluates its data holdings with regard to maintaining access and reserves the right to discontinue the distribution of a data collections when deemed appropriate.When materials are deaccessioned, the data are no longer publicly accessible at Vivli, although they may still be preserved in Vivli’s storage vault. Because digital files are assigned a persistent digital object identifier (DOI), the study description is still available to view, but is not searchable through Vivli. Web crawlers are instructed to ignore the descriptions (via the robots exclusion protocol). For more information about Vivli’s policy, please contact Vivli at support@vivli.org It provides a no-charge period for data only available within their secure research environment. There are costs after the no-charge time period ends. Vivli supports managed access as well as embargoing generally and during peer review. Vivli is funded via grants and member fees.

    more_vert
  • In order to meet the needs of research data management for Peking University. The PKU library cooperate with the NSFC-PKU data center for management science, PKU science and research department, PKU social sciences department to jointly launch the Peking University Open Research Data Platform. PKU Open research data provides preservation, management and distribution services for research data. It encourage data owner to share data and data users to reuse data.

    more_vert
  • IBISBA is a European infrastructure that uniquely produces translational R&D&I services to an international community of industrial biotechnology stakeholders. IBISBA simplifies access to advanced multidisciplinary services that accelerate end-to-end bioprocess development and contributes to the delivery of low carbon, low environmental footprint technologies for a wide variety of market sectors. IBISBAHub is the repository of IBISBA-related projects and data

    more_vert