- Data Repository Germany Not yet registered GFZ Environmental Science, Earth Science, Oceanography
re3data: r3d100013291
Website URL: https://moses-data.gfz-potsdam.de/onestop/#/The Modular Observation Solutions for Earth Systems (MOSES) Data Discovery Portal was created to facilitate access to data and information obtained in MOSES campaigns. MOSES is an Earth and Environment observing system comprising highly flexible and mobile observation modules specifically designed to investigate the interactions of short-term events and long-term trends across Earth compartments. Heat waves, hydrological extremes, ocean eddies and permafrost thaw are the main focuses of this resource.
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For further information contact us at helpdesk@openaire.eu - Data Repository Canada Not yet registered BCCA Life Science, Biological regulation, Small molecule
re3data: r3d100010656
Website URL: http://www.oreganno.org/The Open REGulatory ANNOtation database (ORegAnno) is an open database for the curation of known regulatory elements from scientific literature. Annotation is collected from users worldwide for various biological assays and is automatically cross-referenced against PubMED, Entrez Gene, EnsEMBL, dbSNP, the eVOC: Cell type ontology, and the Taxonomy database.
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For further information contact us at helpdesk@openaire.eu - Data Repository European Union collected from a compatible aggregator Eumetsat Atmospheric Science and Oceanography, Geophysics, Geography
re3data: r3d100010232
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For further information contact us at helpdesk@openaire.eu - Data Repository Germany Not yet registered IBIS Cardiology, Genetics, DiseaseWebsite URL: http://mips.helmholtz-muenchen.de/phenodis/
PhenoDis is a manually annotated database providing symptomatic, genetic and imprinting information about rare cardiac diseases. PhenoDis is primarily concerned with the assignment of clinical symptoms to rare diseases using the biomedical literature as information source and the Human Phenotype Ontology (HPO) as vocabulary.
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For further information contact us at helpdesk@openaire.eu - Data Repository France Not yet registered Strasbourg Astronomical Data Center, Strasbourg Astronomical Observatory, UniStra Astrophysics and Astronomy, Natural Science, Physics
re3data: r3d100010163
Website URL: http://simbad.u-strasbg.fr/simbad/SIMBAD provides information on astronomical objects of interest which have been studied in scientific articles. It provides a bibliography as well as basic information such as the nature of the object, its coordinates, magnitudes, proper motions and parallax, velocity/redshift, size, spectral or morphological type, and the multitude of names (identifiers) given in the literature.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Not yet registered NIH IRP, NLM Genomics, Taxonomy, Virology
re3data: r3d100011005
Website URL: https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/NCBI Virus is a community portal for viral sequence data from RefSeq, GenBank and other NCBI repositories.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Not yet registered ANL, ORNL, TSU Soil Science, Plant Ecology, Environmental Science
re3data: r3d100012864
Website URL: https://www.kbase.usKBase is a large-scale bioinformatics system that enables users to upload their own data, analyze it (along with collaborator and public data), build increasingly realistic models, and share and publish their workflows and conclusions. KBase aims to provide an integrated environment where knowledge and insights are created and multiplied.
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For further information contact us at helpdesk@openaire.eu - Data Repository Italy Not yet registered Bioversity International, Rome, Italy Biodiversity, Life Science, DNA structural variationWebsite URL: https://www.crop-diversity.org/mgis/
The Musa Germplasm Information System (MGIS) contains key information on Musa germplasm diversity, including passport data, botanical classification, morpho-taxonomic descriptors, molecular studies, plant photographs and GIS information on 4771 accessions managed in 24 collections around the world, making it the most extensive source of information on banana genetic resources.
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For further information contact us at helpdesk@openaire.eu - Data Repository Japan Not yet registered Division of Translational Genomics, Exploratory Oncology Research and Clinical Trial Center, National Cancer Center, Chiba, Japan, JSPS Epigenetics, Life Science, TranscriptomicsWebsite URL: http://kero.hgc.jp/
The Database of Kashiwa Encyclopedia for human genome mutations in Regulatory regions and their Omics contexts (DBKERO) stores transcriptome information with a catalogue of genomic variations including public SNP data and epigenome information to enable further in-depth analyses on the disease-causing molecular mechanisms. Recent additions include genomic variation datasets and epigenome variation datasets focusing on the Japanese population. These datasets were collected as a series of genome-wide association studies and as part of International Human Epigenome Consortium (IHEC) projects. The goal is to have this database serve as a model case for the genomic, epigenomic and transcriptomic variations occurring in particular ethnic backgrounds and underlying various diseases. Clinical samples data were also associated with data from various model systems such as drug perturbation datasets using cultured cancer cells.
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For further information contact us at helpdesk@openaire.eu - Data Repository Japan Not yet registered National Institutes of Biomedical Innovation, Health and Nutrition, Japan Toxicogenomics, Biomedical Science, PathologyWebsite URL: http://toxico.nibiohn.go.jp/english/
Open TG-GATEs is a public toxicogenomics database developed so that a wider community of researchers could utilize the fruits of TGP and TGP2 research. This database provides public access to data on 170 of the compounds catalogued in TG-GATEs. Data searching can be refined using either the name of a compound or the pathological findings by organ as the starting point. Gene expression data linked to phenotype data in pathology findings can also be downloaded as a CEL(*)file.
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- Data Repository Germany Not yet registered GFZ Environmental Science, Earth Science, Oceanography
re3data: r3d100013291
Website URL: https://moses-data.gfz-potsdam.de/onestop/#/The Modular Observation Solutions for Earth Systems (MOSES) Data Discovery Portal was created to facilitate access to data and information obtained in MOSES campaigns. MOSES is an Earth and Environment observing system comprising highly flexible and mobile observation modules specifically designed to investigate the interactions of short-term events and long-term trends across Earth compartments. Heat waves, hydrological extremes, ocean eddies and permafrost thaw are the main focuses of this resource.
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For further information contact us at helpdesk@openaire.eu - Data Repository Canada Not yet registered BCCA Life Science, Biological regulation, Small molecule
re3data: r3d100010656
Website URL: http://www.oreganno.org/The Open REGulatory ANNOtation database (ORegAnno) is an open database for the curation of known regulatory elements from scientific literature. Annotation is collected from users worldwide for various biological assays and is automatically cross-referenced against PubMED, Entrez Gene, EnsEMBL, dbSNP, the eVOC: Cell type ontology, and the Taxonomy database.
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For further information contact us at helpdesk@openaire.eu - Data Repository European Union collected from a compatible aggregator Eumetsat Atmospheric Science and Oceanography, Geophysics, Geography
re3data: r3d100010232
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For further information contact us at helpdesk@openaire.eu - Data Repository Germany Not yet registered IBIS Cardiology, Genetics, DiseaseWebsite URL: http://mips.helmholtz-muenchen.de/phenodis/
PhenoDis is a manually annotated database providing symptomatic, genetic and imprinting information about rare cardiac diseases. PhenoDis is primarily concerned with the assignment of clinical symptoms to rare diseases using the biomedical literature as information source and the Human Phenotype Ontology (HPO) as vocabulary.
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For further information contact us at helpdesk@openaire.eu - Data Repository France Not yet registered Strasbourg Astronomical Data Center, Strasbourg Astronomical Observatory, UniStra Astrophysics and Astronomy, Natural Science, Physics
re3data: r3d100010163
Website URL: http://simbad.u-strasbg.fr/simbad/SIMBAD provides information on astronomical objects of interest which have been studied in scientific articles. It provides a bibliography as well as basic information such as the nature of the object, its coordinates, magnitudes, proper motions and parallax, velocity/redshift, size, spectral or morphological type, and the multitude of names (identifiers) given in the literature.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Not yet registered NIH IRP, NLM Genomics, Taxonomy, Virology
re3data: r3d100011005
Website URL: https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/NCBI Virus is a community portal for viral sequence data from RefSeq, GenBank and other NCBI repositories.
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For further information contact us at helpdesk@openaire.eu - Data Repository United States Not yet registered ANL, ORNL, TSU Soil Science, Plant Ecology, Environmental Science
re3data: r3d100012864
Website URL: https://www.kbase.usKBase is a large-scale bioinformatics system that enables users to upload their own data, analyze it (along with collaborator and public data), build increasingly realistic models, and share and publish their workflows and conclusions. KBase aims to provide an integrated environment where knowledge and insights are created and multiplied.
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For further information contact us at helpdesk@openaire.eu - Data Repository Italy Not yet registered Bioversity International, Rome, Italy Biodiversity, Life Science, DNA structural variationWebsite URL: https://www.crop-diversity.org/mgis/
The Musa Germplasm Information System (MGIS) contains key information on Musa germplasm diversity, including passport data, botanical classification, morpho-taxonomic descriptors, molecular studies, plant photographs and GIS information on 4771 accessions managed in 24 collections around the world, making it the most extensive source of information on banana genetic resources.
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For further information contact us at helpdesk@openaire.eu - Data Repository Japan Not yet registered Division of Translational Genomics, Exploratory Oncology Research and Clinical Trial Center, National Cancer Center, Chiba, Japan, JSPS Epigenetics, Life Science, TranscriptomicsWebsite URL: http://kero.hgc.jp/
The Database of Kashiwa Encyclopedia for human genome mutations in Regulatory regions and their Omics contexts (DBKERO) stores transcriptome information with a catalogue of genomic variations including public SNP data and epigenome information to enable further in-depth analyses on the disease-causing molecular mechanisms. Recent additions include genomic variation datasets and epigenome variation datasets focusing on the Japanese population. These datasets were collected as a series of genome-wide association studies and as part of International Human Epigenome Consortium (IHEC) projects. The goal is to have this database serve as a model case for the genomic, epigenomic and transcriptomic variations occurring in particular ethnic backgrounds and underlying various diseases. Clinical samples data were also associated with data from various model systems such as drug perturbation datasets using cultured cancer cells.
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For further information contact us at helpdesk@openaire.eu - Data Repository Japan Not yet registered National Institutes of Biomedical Innovation, Health and Nutrition, Japan Toxicogenomics, Biomedical Science, PathologyWebsite URL: http://toxico.nibiohn.go.jp/english/
Open TG-GATEs is a public toxicogenomics database developed so that a wider community of researchers could utilize the fruits of TGP and TGP2 research. This database provides public access to data on 170 of the compounds catalogued in TG-GATEs. Data searching can be refined using either the name of a compound or the pathological findings by organ as the starting point. Gene expression data linked to phenotype data in pathology findings can also be downloaded as a CEL(*)file.
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