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2,176 Data sources

  • FAIRsharing

  • CAS (Chemical Abstracts Service) Common Chemistry is an open community resource for accessing chemical information. Nearly 500,000 chemical substances from the CAS REGISTRY cover areas of community interest, including common and frequently regulated chemicals, and those relevant to high school and undergraduate chemistry classes. This chemical information is manually curated and provided in alignment with their role as a division of the American Chemical Society.

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  • ProbOnto, is an ontology-based knowledge base of probability distributions, featuring more than 150 uni- and multivariate distributions with their defining functions, characteristics, relationships and re-parameterization formulas. It can be used for model annotation and facilitates the encoding of distribution-based models, related functions and quantities. ProbOnto is both an ontology and a knowledge base, however its primary focus is the knowledge base.

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  • To understand the mechanisms of influenza A viral replication and the host responses, we took the literature-based manual curation approach to construct a comprehensive influenza virus-host respoce map. The infuenza A virus (IAV) comprehensive pathway map (FluMap) was constructed by manual curation with the literature as well as various pathway databases such as Reactome, KEGG and Panther Pathway database.

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  • ThaleMine enables you to analyze Arabidopsis thaliana genes, proteins, gene expression, protein-protein interactions, orthologs, and more. Use plain text or structured queries for interactive gene and protein reports.

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  • The cisRED database holds conserved sequence motifs identified by genome scale motif discovery, similarity, clustering, co-occurrence and coexpression calculations. Sequence inputs include low-coverage genome sequence data and ENCODE data.

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  • The National Science Foundation's National Ecological Observatory Network (NEON) is a continental-scale observation facility research data infrastructure, operated by Battelle, and designed to collect long-term open access ecological data. The NEON data portal provides access to standardized and quality-controlled data product types including meteorological, soil, organismal, biogeochemical, freshwater aquatic, and remote sensing data across application domains.

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  • Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization, and management. It integrates protein-protein interaction (PPI) data from public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms. In particular, it provides a variety of built-in tools to filter and analyze the networks for gaining biological and functional insights into the network.

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  • EBAS is a database hosting observation data of atmospheric chemical composition and physical properties. EBAS hosts data submitted by data originators in support of a number of national and international programs ranging from monitoring activities to research projects. EBAS is developed and operated by the Norwegian Institute for Air Research (NILU).

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  • QUADRatlas is a database of experimentally-derived and computationally predicted RNA G-quadruplex (RG4s) in the human transcriptome, enriched with biological function and disease associations. QUADRatlas includes known interactions of RG4s with RNA-binding proteins (RBPs), complemented with an extensive RBP binding sites dataset. Users can thus intersect RG4s with their potential regulators and effectors, enabling the formulation of novel hypotheses on RG4 regulation, function and pathogenicity. To support this capability, we provide analysis tools for predicting whether an RBP can bind RG4s, RG4 enrichment in a gene set, and de novo RG4 prediction. Genome-browser and table views allow exploring, filtering, and downloading the data quickly for individual genes and in batch.

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2,176 Data sources
  • CAS (Chemical Abstracts Service) Common Chemistry is an open community resource for accessing chemical information. Nearly 500,000 chemical substances from the CAS REGISTRY cover areas of community interest, including common and frequently regulated chemicals, and those relevant to high school and undergraduate chemistry classes. This chemical information is manually curated and provided in alignment with their role as a division of the American Chemical Society.

    more_vert
  • ProbOnto, is an ontology-based knowledge base of probability distributions, featuring more than 150 uni- and multivariate distributions with their defining functions, characteristics, relationships and re-parameterization formulas. It can be used for model annotation and facilitates the encoding of distribution-based models, related functions and quantities. ProbOnto is both an ontology and a knowledge base, however its primary focus is the knowledge base.

    more_vert
  • To understand the mechanisms of influenza A viral replication and the host responses, we took the literature-based manual curation approach to construct a comprehensive influenza virus-host respoce map. The infuenza A virus (IAV) comprehensive pathway map (FluMap) was constructed by manual curation with the literature as well as various pathway databases such as Reactome, KEGG and Panther Pathway database.

    more_vert
  • ThaleMine enables you to analyze Arabidopsis thaliana genes, proteins, gene expression, protein-protein interactions, orthologs, and more. Use plain text or structured queries for interactive gene and protein reports.

    more_vert
  • The cisRED database holds conserved sequence motifs identified by genome scale motif discovery, similarity, clustering, co-occurrence and coexpression calculations. Sequence inputs include low-coverage genome sequence data and ENCODE data.

    more_vert
  • more_vert
  • The National Science Foundation's National Ecological Observatory Network (NEON) is a continental-scale observation facility research data infrastructure, operated by Battelle, and designed to collect long-term open access ecological data. The NEON data portal provides access to standardized and quality-controlled data product types including meteorological, soil, organismal, biogeochemical, freshwater aquatic, and remote sensing data across application domains.

    more_vert
  • Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization, and management. It integrates protein-protein interaction (PPI) data from public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms. In particular, it provides a variety of built-in tools to filter and analyze the networks for gaining biological and functional insights into the network.

    more_vert
  • EBAS is a database hosting observation data of atmospheric chemical composition and physical properties. EBAS hosts data submitted by data originators in support of a number of national and international programs ranging from monitoring activities to research projects. EBAS is developed and operated by the Norwegian Institute for Air Research (NILU).

    more_vert
  • QUADRatlas is a database of experimentally-derived and computationally predicted RNA G-quadruplex (RG4s) in the human transcriptome, enriched with biological function and disease associations. QUADRatlas includes known interactions of RG4s with RNA-binding proteins (RBPs), complemented with an extensive RBP binding sites dataset. Users can thus intersect RG4s with their potential regulators and effectors, enabling the formulation of novel hypotheses on RG4 regulation, function and pathogenicity. To support this capability, we provide analysis tools for predicting whether an RBP can bind RG4s, RG4 enrichment in a gene set, and de novo RG4 prediction. Genome-browser and table views allow exploring, filtering, and downloading the data quickly for individual genes and in batch.

    more_vert