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3,910 research outcomes, page 1 of 391
  • Image processing pipeline designed to reduce noise, accent vasculature, and quantify anatomical properties of flattened en-face image of the choriocapillaris taken from ultrahigh-speed FDML-OCT volumes. It uses a custom designed Local Minimum Maximum Normalized Masking ...

  • software . 2020
    Open Access

    <div>A program used to calculate the cumulative stress index (CSI) on seagrass, described in the manuscript "Predicting seagrass decline due to cumulative stressors".<br></div><div><br></div><div>Windows and Mac versions of the seagrass CSI program are provided. To run ...

  • software . 2016
    Open Access

    Annotation of <em>Ostrea lurida</em> transcriptome: analysis of gonads in control and ocean acidification conditions<p>For my project, I analyzed four different Olympic oyster (<em>Ostrea lurida</em>) gonad nucleotide sequences with accompanying quality scores (.fastq f...

  • software . 2016
    Open Access

    <p>This repository contains the Companion pipeline source code, input data and results produced for the "Reproducible in-silico omics analyses across clouds and clusters" paper. The content of this repository is available on GitHub at the following link https://github.c...

  • software . 2017
    Open Access

    <p>SAMRI (Small Animal Magnetic Resonance Imaging) - pronounced "Sam-rye" - provides fMRI preprocessing, metadata parsing, and data analysis functions and pipelines. SAMRI integrates functionalities from a number of other packages (listed under the dependencies section ...

  • software . 2020
    Open Access
    Authors:
    Greer, Meredith; Saha, Raj; Gogliettino, Alex; Chialin Yu; Zollo-Venecek, Kyle;
    Publisher: The Royal Society

    A simple susceptible–infectious–removed epidemic model for smallpox, with birth and death rates based on historical data, produces oscillatory dynamics with remarkably accurate periodicity. Stochastic population data cause oscillations to be sustained rather than damped...

  • software . 2020
    Open Access
  • software . 2014
    Open Access

    <p>Intro to Reproducible Research with Rmarkdown: data management, analysis, and reporting all-in-one</p>

  • software . 2020
    Open Access

    <p>Custom software source code associated with the the paper "Quantifying influences on intragenomic mutation rate".</p> <p>Code can also be downloaded from <a href="https://github.com/helmutsimon/ProbPolymorphism">https://github.com/helmutsimon/ProbPolymorphism</a>. Re...

  • software . 2015
    Open Access
3,910 research outcomes, page 1 of 391
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