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Simple nagios probe that checks the status of a EGI Notebooks deployment

This release includes the following changes: for preprocess.create_event_file we rename symbols to allowed_symbols to make this argument more self-explainable the default value of allowed_symbols is now most inclusive and it is a keyword only argument allowed_symbols can take a filter function, which defines on a character by character basis, if this character should be included into the event file fixed a bug in the writing of file names in the corpus module no deprecation warnings will be introduced in this release and this release breaks some API, so please check, if your code still runs wheels for linux should be released from now on test coverage is increased and explicitly tests filter functionality and a non-ascii charater sets; running --runslow is successfully completes all tests now package maintenance is now done with pypoetry instead of a combination of setuptools, tox, and a Makefile we stop signing the package with a gpg key with this release as it is not supported by pypoetry and seems not to have been adapted by the Python community adds benchmark to the documentation, which compares pyndl with ndl2 and ndl restructures the documentation to improve readability Thanks to @Trybnetic and @dekuenstle , who made this release possible and to @frankier who raised good issues and pointed out areas of improvement.

to-do

List of bioinformatics containers and workflows including metadata, statistics at https://biocontainers.pro/

Bioconda is a channel for the conda package manager specializing in bioinformatics software. Bioconda consists of: - a repository of recipes hosted on GitHub - a build system turning these recipes into conda packages - a repository of packages containing over 8000 bioinformatics packages ready to use with conda install - over 850 contributors and 570 members who add, modify, update and maintain the recipes

The European Galaxy server (https://usegalaxy.eu) is an open, web-based platform for data-intensive research and provides access to: 1. compute and storage resources without any charge 2. more than 2000 different, well-documented and constantly maintained scientific tools 3. Training material for omics, cheminformatics, machine learning and much more 4. Training Infrastructure as a Service (https://galaxyproject.eu/tiaas) 5. 250 GB per user (500 GB for ELIXIR members). When this effort is combined with our community-maintained workflows and our in-depth training material, it makes up for a truly productive work experience. We believe in enabling everyone to perform reproducible and transparent science. The European Galaxy project is a joint effort of multiple countries and hundreds of contributors. The benefit to a customer and their users delivered by a service; benefits are usually related to alleviating pains (e.g., eliminating undesired outcomes, obstacles or risks) or producing gains (e.g. increased performance, social gains, positive emotions or cost-saving).

This is the first release of the code that creates a speech corpus from the annotations in the GECO corpus by creating gesture files for VocalTractLab and synthesizing them with VocalTractLab. At the moment the code runs only under Linux.

Three-dimensional (3D) electro-magnetic modeling tool for superconductors and normal conductors using the Minimum Electro-Magnetic Entropy Production (MEMEP) variational principle (https://doi.org/10.1016/j.jcp.2017.05.001). Updated version of the repository at GitHub: https://github.com/epardov/MEMEP3Dtool {"references": ["E Pardo and M Kapolka, Journal of Computational Physics, vol. 344, pp. 339-363 (2017)", "M Kapolka and E Pardo 2019 Supercond. Sci. Technol. 32 054001", "M Kapolka and E Pardo 2019 Supercond. Sci. Technol. 10.1088/1361-6668/ab5aca"]}

gfal2-util is a set of basic utility tools for file interactions and file copy based on the GFAL 2.0 toolkit. gfal2-util supports the protocols of GFAL 2.0 : WebDav(s), gridFTP, http(s), SRM, xrootd, etc.

Release accompanying the publication of the AIAA conference paper: "System Architecture Optimization: An Open Source Multidisciplinary Aircraft Jet Engine Architecting Benchmark Problem"