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  • Open Access
    Authors: 
    Abby Keable; Kate Fenna; Ho Ming Yuen; David A. Johnston; Neil Smyth; Colin Smith; Rustam Al-Shahi Salman; Neshika Samarasekera; James A. R. Nicoll; Johannes Attems; +3 more
    Publisher: Elsevier BV
    Country: United Kingdom
    Project: UKRI | Physiology of perivascula... (BB/K015540/1), UKRI | Support for Newcastle Bra... (G0400074), UKRI | Cerebral amyloid angiopat... (G1002605), UKRI | The contribution of amylo... (G0900428)

    Deposition of amyloid β (Aβ) in the walls of cerebral arteries as cerebral amyloid angiopathy (CAA) suggests an age-related failure of perivascular drainage of soluble Aβ from the brain. As CAA is associated with Alzheimer's disease and with intracerebral haemorrhage, the present study determines the unique sequence of changes that occur as Aβ accumulates in artery walls. Paraffin sections of post-mortem human occipital cortex were immunostained for collagen IV, fibronectin, nidogen 2, Aβ and smooth muscle actin and the immunostaining was analysed using Image J and confocal microscopy. Results showed that nidogen 2 (entactin) increases with age and decreases in CAA. Confocal microscopy revealed stages in the progression of CAA: Aβ initially deposits in basement membranes in the tunica media, replaces first the smooth muscle cells and then the connective tissue elements to leave artery walls completely or focally replaced by Aβ. The pattern of development of CAA in the human brain suggests expansion of Aβ from the basement membranes to progressively replace all tissue elements in the artery wall. Establishing this full picture of the development of CAA is pivotal in understanding the clinical presentation of CAA and for developing therapies to prevent accumulation of Aβ in artery walls. This article is part of a Special Issue entitled: Vascular Contributions to Cognitive Impairment and Dementia edited by M. Paul Murphy, Roderick A. Corriveau and Donna M. Wilcock. Highlights • Lymphatic drainage of the brain is along basement membranes in the walls of arteries. • Perivascular lymphatic drainage fails with age and arteriosclerosis. • Aβ deposits in the perivascular drainage pathways of leptomeningeal arteries as CAA. • As CAA progresses, Aβ replaces all elements of the ageing artery wall. • Facilitation of perivascular drainage may prevent CAA and delay Alzheimer's disease.

  • Open Access English
    Authors: 
    Poologasundarampillai, Gowsihan; Yu, Bobo; Tsigkou, Olga; Wang, Daming; Romer, Frederik; Bhakhri, Vineet; Giuliani, Finn; Stevens, Molly M.; Mcphail, David S.; Smith, Mark E.; +2 more
    Country: United Kingdom
    Project: UKRI | Hybrid approaches to tiss... (EP/I020861/1)

    Current materials used for bone regeneration are usually bioactive ceramics or glasses. Although they bond to bone, they are brittle. There is a need for new materials that can combine bioactivity with toughness and controlled biodegradation. Sol-gel hybrids have the potential to do this through their nanoscale interpenetrating networks (IPN) of inorganic and organic components. Poly(γ-glutamic acid) (γ-PGA) was introduced into the sol-gel process to produce a hybrid of γ-PGA and bioactive silica. Calcium is an important element for bone regeneration but calcium sources that are used traditionally in the sol-gel process, such as Ca salts, do not allow Ca incorporation into the silicate network during low-temperature processing. The hypothesis for this study was that using calcium methoxyethoxide (CME) as the Ca source would allow Ca incorporation into the silicate component of the hybrid at room temperature. The produced hybrids would have improved mechanical properties and controlled degradation compared with hybrids of calcium chloride (CaCl2), in which the Ca is not incorporated into the silicate network. Class II hybrids, with covalent bonds between the inorganic and organic species, were synthesised by using organosilane. Calcium incorporation in both the organic and inorganic IPNs of the hybrid was improved when CME was used. This was clearly observed by using FTIR and solid-state NMR spectroscopy, which showed ionic cross-linking of γ-PGA by Ca and a lower degree of condensation of the Si species compared with the hybrids made with CaCl2 as the Ca source. The ionic cross-linking of γ-PGA by Ca resulted in excellent compressive strength and reduced elastic modulus as measured by compressive testing and nanoindentation, respectively. All hybrids showed bioactivity as hydroxyapatite (HA) was formed after immersion in simulated body fluid (SBF).

  • Open Access
    Authors: 
    Alexander Belyaev; Kazem Bitaghsir Fadafan; Nick Evans; Mansoureh Gholamzadeh;
    Publisher: American Physical Society (APS)
    Country: United Kingdom
    Project: UKRI | New Frontiers in Particle... (ST/P000711/1)

    We use a holographic description of technicolor dynamics to study gauge theories that only break chiral symmetry when aided by a strong four fermion interaction. These Nambu-Jona-Lasinio (NJL) assisted technicolor models provide examples of different dynamics from walking technicolor which can, by tuning, generate a light higgs like $\sigma$ meson. We compute the vector meson ($\rho$) and axial vector meson (A) spectrum for a variety of models with techni-quarks in the fundamental representation, enlarging the available parameter space over a previous analysis of walking theories. These predictions determine the parameter space of a low energy effective description where LHC constraints from dilepton channels have already been applied. Many of the models with low numbers of electroweak doublets still lie beyond current constraints and motivate exploration of new signatures beyond dilepton for LHC and a 100 TeV proton collider. Comment: 13 pages, 6 figures, 9 tables

  • Open Access
    Authors: 
    Timothy J. Underwood; Fergus Noble; N. Madhusudan; D. Sharland; R. Fraser; J. Owsley; M. Grant; Jamie Kelly; James P. Byrne;
    Publisher: Springer Science and Business Media LLC
    Country: United Kingdom
    Project: UKRI | Exploring stromal-epithel... (G1002565)

    Background Enhanced recovery programmes improve outcomes in surgery, but their implementation after upper gastrointestinal resection has been limited. The aim of this study was to compare short-term outcomes for patients undergoing oesophagogastric surgery in an enhanced recovery programme (EROS). Methods EROS was developed after a multidisciplinary meeting by multiple rounds of revision. EROS was applied to all patients undergoing major upper GI resection at a university teaching hospital in the UK from 20/9/13, with data reviewed at 18/09/15. EROS was assessed to identify predictors for compliance. Results One hundred six patients underwent major upper GI resection including 81 oesophagectomies, 24 gastrectomies and 1 colonic interposition graft. Major complications (Clavien Dindo ≥3) occurred in 12 patients with 1 in-hospital death. Thirty-five patients (44%) were discharged on target day 8 of the EROS programme. Age and complications were independently associated with missing this discharge target. Conclusion Enhanced recovery is feasible and safe after major upper gastrointestinal surgery. Electronic supplementary material The online version of this article (doi:10.1007/s11605-017-3363-8) contains supplementary material, which is available to authorized users.

  • Open Access English
    Authors: 
    Matthew P. Humphreys; Eric P. Achterberg; Alex M. Griffiths; Alison McDonald; Adrian J. Boyce;
    Countries: United Kingdom, United Kingdom, Germany, United Kingdom
    Project: UKRI | Ocean Acidification Impac... (NE/H017348/1), UKRI | Southampton-2011-DTG-Fund... (NE/J500112/1)

    The stable carbon isotope composition of dissolved inorganic carbon (δ13CDIC) in seawater was measured in a batch process for 552 samples collected during two cruises in the northeastern Atlantic and Nordic Seas from June to August 2012. One cruise was part of the UK Ocean Acidification research programme, and the other was a repeat hydrographic transect of the Extended Ellett Line. In combination with measurements made of other variables on these and other cruises, these data can be used to constrain the anthropogenic component of dissolved inorganic carbon (DIC) in the interior ocean, and to help to determine the influence of biological carbon uptake on surface ocean carbonate chemistry. The measurements have been processed, quality-controlled and submitted to an in-preparation global compilation of seawater δ13CDIC data, and are available from the British Oceanographic Data Centre. The observed δ13CDIC values fall in a range from −0.58 to +2.37 ‰, relative to the Vienna Pee Dee Belemnite standard. The mean of the absolute differences between samples collected in duplicate in the same container type during both cruises and measured consecutively is 0.10 ‰, which corresponds to a 1σ uncertainty of 0.09 ‰, and which is within the range reported by other published studies of this kind. A crossover analysis was performed with nearby historical δ13CDIC data, indicating that any systematic offsets between our measurements and previously published results are negligible. Data doi:10.5285/09760a3a-c2b5-250b-e053-6c86abc037c0 (northeastern Atlantic), doi:10.5285/09511dd0-51db-0e21-e053-6c86abc09b95 (Nordic Seas).

  • Open Access
    Authors: 
    Gordon N. Inglis; Margaret E. Collinson; Walter Riegel; Volker Wilde; Alexander Farnsworth; Daniel J. Lunt; Paul J. Valdes; Brittany E. Robson; Andrew C. Scott; Olaf K. Lenz; +2 more
    Publisher: Elsevier BV
    Country: United Kingdom
    Project: UKRI | The Descent into the Iceh... (NE/I005714/1), UKRI | Cretaceous-Paleocene-Eoce... (NE/K012479/1), EC | TGRES (340923)

    Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are increasingly used to reconstruct mean annual air temperature (MAAT) during the early Paleogene. However, the application of this proxy in coal deposits is limited and brGDGTs have only been detected in immature coals (i.e. lignites). Using samples recovered from Schöningen, Germany (∼48°N palaeolatitude), we provide the first detailed study into the occurrence and distribution of brGDGTs through a sequence of early Eocene lignites and associated interbeds. BrGDGTs are abundant and present in every sample. In comparison to modern studies, changes in vegetation type do not appear to significantly impact brGDGT distributions; however, there are subtle differences between lignites – representing peat-forming environments – and siliciclastic nearshore marine interbed depositional environments. Using the most recent brGDGT temperature calibration (MATmr) developed for soils, we generate the first continental temperature record from central-western continental Europe through the early Eocene. Lignite-derived MAAT estimates range from 23 to 26 °C while those derived from the nearshore marine interbeds exceed 20 °C. These estimates are consistent with other mid-latitude environments and model simulations, indicating enhanced mid-latitude, early Eocene warmth. In the basal part of the section studied, warming is recorded in both the lignites (∼2 °C) and nearshore marine interbeds (∼2–3 °C). This culminates in a long-term temperature maximum, likely including the Early Eocene Climatic Optimum (EECO). Although this long-term warming trend is relatively well established in the marine realm, it has rarely been shown in terrestrial settings. Using a suite of model simulations we show that the magnitude of warming at Schöningen is broadly consistent with a doubling of CO2, in agreement with late Paleocene and early Eocene pCO2 estimates.

  • Publication . Article . Other literature type . Preprint . 2020
    Open Access
    Authors: 
    Yasunori Watanabe; Zachary T. Berndsen; Jayna Raghwani; Gemma E. Seabright; Joel D. Allen; Oliver G. Pybus; Jason S. McLellan; Ian A. Wilson; Thomas A. Bowden; Andrew B. Ward; +1 more
    Publisher: Cold Spring Harbor Laboratory
    Country: United Kingdom
    Project: NIH | Structure, Function and A... (5R01AI127521-03), WT | Human Genetics and Diseas... (203141), NIH | Exploiting Vulnerability ... (1R56AI127371-01), UKRI | The Language of Zoonosis:... (MR/S007555/1)

    Severe acute respiratory syndrome (SARS) and Middle East respiratory syndrome (MERS) coronaviruses (CoVs) are zoonotic pathogens with high fatality rates and pandemic potential. Vaccine development focuses on the principal target of the neutralizing humoral immune response, the spike (S) glycoprotein. Coronavirus S proteins are extensively glycosylated, encoding around 66–87 N-linked glycosylation sites per trimeric spike. Here, we reveal a specific area of high glycan density on MERS S that results in the formation of oligomannose-type glycan clusters, which were absent on SARS and HKU1 CoVs. We provide a comparison of the global glycan density of coronavirus spikes with other viral proteins including HIV-1 envelope, Lassa virus glycoprotein complex, and influenza hemagglutinin, where glycosylation plays a known role in shielding immunogenic epitopes. Overall, our data reveal how organisation of glycosylation across class I viral fusion proteins influence not only individual glycan compositions but also the immunological pressure across the protein surface. Glycosylation plays a key role in shielding of immunogenic epitopes on viral spike (S) proteins. Here Watanabe et al. report that glycans of coronavirus SARS and MERS S proteins are heterogeneously distributed and do not form an efficacious high-density global shield which would ensure efficient immune evasion.

  • Open Access
    Authors: 
    Matthias Feinaeugle; Daniel J. Heath; Benjamin Mills; James A. Grant-Jacob; Goran Z. Mashanovich; Robert W. Eason;
    Publisher: Springer Science and Business Media LLC
    Country: United Kingdom
    Project: UKRI | Integrated Photonic Mater... (EP/J008052/1), UKRI | Digital Multimirror Devic... (EP/L022230/1)

    Femtosecond laser-induced backward transfer of transparent photopolymers is demonstrated in the solid state, assisted by a digital micromirror spatial light modulator for producing shaped deposits. Through use of an absorbing silicon carrier substrate, we have been able to successfully transfer solid-phase material, with lateral dimensions as small as ~6 microns. In addition, a carrier of silicon incorporating a photonic waveguide relief structure enables the transfer of imprinted deposits that have been accomplished with surface features exactly complementing those present on the substrate, with an observed minimum feature size of 140 nm.

  • Open Access
    Authors: 
    Yena Song; John Preston; David Ogilvie;
    Country: United Kingdom
    Project: UKRI | Measuring and Evaluating ... (EP/G00059X/1)

    Heavy dependency on car use leads to traffic congestion, pollution, and physical inactivity, which impose high direct and indirect costs on society. Promoting walking and cycling has been recognised as one of the means of mitigating such negative effects. Various approaches have been taken to enhance walking and cycling levels and to reduce the use of automobiles. This paper examines the effectiveness of infrastructure interventions in promoting walking and cycling for transport. Two related sets of panel data, covering elapsed time periods of one and two years, were analysed to track changes in travel behaviour following provision of new walking and cycling infrastructure so that modal shift from private car use to walking and cycling can be investigated. Two types of exposure measures were tested: distance from the infrastructure (a measure of potential usage), and actual usage of the infrastructure. Only the latter measure was statistically significantly associated with modal shift. This in turn suggested that infrastructure provision was not a sufficient condition for modal shift, but may have been a necessary condition. Along with the use of new infrastructure, the loss of employment, higher education, being male and being part of the ethnic majority were consistently found to be significantly and positively associated with modal shift towards walking and cycling. The findings of this study support the construction of walking and cycling routes, but also suggest that such infrastructure alone may not be enough to promote active travel.

  • Open Access English
    Authors: 
    Ulrich Sternberg; Raiker Witter; Ilya Kuprov; Jonathan M. Lamley; Andres Oss; Józef R. Lewandowski; Ago Samoson;
    Publisher: Academic Press
    Countries: United Kingdom, Germany, United Kingdom
    Project: UKRI | Biophysical basis for the... (BB/L022761/1), EC | complexNMR (639907), UKRI | 100 kHz magic angle spinn... (EP/L025906/1)

    Recent developments in magic angle spinning (MAS) technology permit spinning frequencies of ≥100 kHz. We examine the effect of such fast MAS rates upon nuclear magnetic resonance proton line widths in the multi-spin system of β-Asp-Ala crystal. We perform powder pattern simulations employing Fokker-Plank approach with periodic boundary conditions and 1H-chemical shift tensors calculated using the bond polarization theory. The theoretical predictions mirror well the experimental results. Both approaches demonstrate that homogeneous broadening has a linear-quadratic dependency on the inverse of the MAS spinning frequency and that, at the faster end of the spinning frequencies, the residual spectral line broadening becomes dominated by chemical shift distributions and susceptibility effects even for crystalline systems.

Advanced search in
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arrow_drop_down
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Include:
2,028 Research products, page 1 of 203
  • Open Access
    Authors: 
    Abby Keable; Kate Fenna; Ho Ming Yuen; David A. Johnston; Neil Smyth; Colin Smith; Rustam Al-Shahi Salman; Neshika Samarasekera; James A. R. Nicoll; Johannes Attems; +3 more
    Publisher: Elsevier BV
    Country: United Kingdom
    Project: UKRI | Physiology of perivascula... (BB/K015540/1), UKRI | Support for Newcastle Bra... (G0400074), UKRI | Cerebral amyloid angiopat... (G1002605), UKRI | The contribution of amylo... (G0900428)

    Deposition of amyloid β (Aβ) in the walls of cerebral arteries as cerebral amyloid angiopathy (CAA) suggests an age-related failure of perivascular drainage of soluble Aβ from the brain. As CAA is associated with Alzheimer's disease and with intracerebral haemorrhage, the present study determines the unique sequence of changes that occur as Aβ accumulates in artery walls. Paraffin sections of post-mortem human occipital cortex were immunostained for collagen IV, fibronectin, nidogen 2, Aβ and smooth muscle actin and the immunostaining was analysed using Image J and confocal microscopy. Results showed that nidogen 2 (entactin) increases with age and decreases in CAA. Confocal microscopy revealed stages in the progression of CAA: Aβ initially deposits in basement membranes in the tunica media, replaces first the smooth muscle cells and then the connective tissue elements to leave artery walls completely or focally replaced by Aβ. The pattern of development of CAA in the human brain suggests expansion of Aβ from the basement membranes to progressively replace all tissue elements in the artery wall. Establishing this full picture of the development of CAA is pivotal in understanding the clinical presentation of CAA and for developing therapies to prevent accumulation of Aβ in artery walls. This article is part of a Special Issue entitled: Vascular Contributions to Cognitive Impairment and Dementia edited by M. Paul Murphy, Roderick A. Corriveau and Donna M. Wilcock. Highlights • Lymphatic drainage of the brain is along basement membranes in the walls of arteries. • Perivascular lymphatic drainage fails with age and arteriosclerosis. • Aβ deposits in the perivascular drainage pathways of leptomeningeal arteries as CAA. • As CAA progresses, Aβ replaces all elements of the ageing artery wall. • Facilitation of perivascular drainage may prevent CAA and delay Alzheimer's disease.

  • Open Access English
    Authors: 
    Poologasundarampillai, Gowsihan; Yu, Bobo; Tsigkou, Olga; Wang, Daming; Romer, Frederik; Bhakhri, Vineet; Giuliani, Finn; Stevens, Molly M.; Mcphail, David S.; Smith, Mark E.; +2 more
    Country: United Kingdom
    Project: UKRI | Hybrid approaches to tiss... (EP/I020861/1)

    Current materials used for bone regeneration are usually bioactive ceramics or glasses. Although they bond to bone, they are brittle. There is a need for new materials that can combine bioactivity with toughness and controlled biodegradation. Sol-gel hybrids have the potential to do this through their nanoscale interpenetrating networks (IPN) of inorganic and organic components. Poly(γ-glutamic acid) (γ-PGA) was introduced into the sol-gel process to produce a hybrid of γ-PGA and bioactive silica. Calcium is an important element for bone regeneration but calcium sources that are used traditionally in the sol-gel process, such as Ca salts, do not allow Ca incorporation into the silicate network during low-temperature processing. The hypothesis for this study was that using calcium methoxyethoxide (CME) as the Ca source would allow Ca incorporation into the silicate component of the hybrid at room temperature. The produced hybrids would have improved mechanical properties and controlled degradation compared with hybrids of calcium chloride (CaCl2), in which the Ca is not incorporated into the silicate network. Class II hybrids, with covalent bonds between the inorganic and organic species, were synthesised by using organosilane. Calcium incorporation in both the organic and inorganic IPNs of the hybrid was improved when CME was used. This was clearly observed by using FTIR and solid-state NMR spectroscopy, which showed ionic cross-linking of γ-PGA by Ca and a lower degree of condensation of the Si species compared with the hybrids made with CaCl2 as the Ca source. The ionic cross-linking of γ-PGA by Ca resulted in excellent compressive strength and reduced elastic modulus as measured by compressive testing and nanoindentation, respectively. All hybrids showed bioactivity as hydroxyapatite (HA) was formed after immersion in simulated body fluid (SBF).

  • Open Access
    Authors: 
    Alexander Belyaev; Kazem Bitaghsir Fadafan; Nick Evans; Mansoureh Gholamzadeh;
    Publisher: American Physical Society (APS)
    Country: United Kingdom
    Project: UKRI | New Frontiers in Particle... (ST/P000711/1)

    We use a holographic description of technicolor dynamics to study gauge theories that only break chiral symmetry when aided by a strong four fermion interaction. These Nambu-Jona-Lasinio (NJL) assisted technicolor models provide examples of different dynamics from walking technicolor which can, by tuning, generate a light higgs like $\sigma$ meson. We compute the vector meson ($\rho$) and axial vector meson (A) spectrum for a variety of models with techni-quarks in the fundamental representation, enlarging the available parameter space over a previous analysis of walking theories. These predictions determine the parameter space of a low energy effective description where LHC constraints from dilepton channels have already been applied. Many of the models with low numbers of electroweak doublets still lie beyond current constraints and motivate exploration of new signatures beyond dilepton for LHC and a 100 TeV proton collider. Comment: 13 pages, 6 figures, 9 tables

  • Open Access
    Authors: 
    Timothy J. Underwood; Fergus Noble; N. Madhusudan; D. Sharland; R. Fraser; J. Owsley; M. Grant; Jamie Kelly; James P. Byrne;
    Publisher: Springer Science and Business Media LLC
    Country: United Kingdom
    Project: UKRI | Exploring stromal-epithel... (G1002565)

    Background Enhanced recovery programmes improve outcomes in surgery, but their implementation after upper gastrointestinal resection has been limited. The aim of this study was to compare short-term outcomes for patients undergoing oesophagogastric surgery in an enhanced recovery programme (EROS). Methods EROS was developed after a multidisciplinary meeting by multiple rounds of revision. EROS was applied to all patients undergoing major upper GI resection at a university teaching hospital in the UK from 20/9/13, with data reviewed at 18/09/15. EROS was assessed to identify predictors for compliance. Results One hundred six patients underwent major upper GI resection including 81 oesophagectomies, 24 gastrectomies and 1 colonic interposition graft. Major complications (Clavien Dindo ≥3) occurred in 12 patients with 1 in-hospital death. Thirty-five patients (44%) were discharged on target day 8 of the EROS programme. Age and complications were independently associated with missing this discharge target. Conclusion Enhanced recovery is feasible and safe after major upper gastrointestinal surgery. Electronic supplementary material The online version of this article (doi:10.1007/s11605-017-3363-8) contains supplementary material, which is available to authorized users.

  • Open Access English
    Authors: 
    Matthew P. Humphreys; Eric P. Achterberg; Alex M. Griffiths; Alison McDonald; Adrian J. Boyce;
    Countries: United Kingdom, United Kingdom, Germany, United Kingdom
    Project: UKRI | Ocean Acidification Impac... (NE/H017348/1), UKRI | Southampton-2011-DTG-Fund... (NE/J500112/1)

    The stable carbon isotope composition of dissolved inorganic carbon (δ13CDIC) in seawater was measured in a batch process for 552 samples collected during two cruises in the northeastern Atlantic and Nordic Seas from June to August 2012. One cruise was part of the UK Ocean Acidification research programme, and the other was a repeat hydrographic transect of the Extended Ellett Line. In combination with measurements made of other variables on these and other cruises, these data can be used to constrain the anthropogenic component of dissolved inorganic carbon (DIC) in the interior ocean, and to help to determine the influence of biological carbon uptake on surface ocean carbonate chemistry. The measurements have been processed, quality-controlled and submitted to an in-preparation global compilation of seawater δ13CDIC data, and are available from the British Oceanographic Data Centre. The observed δ13CDIC values fall in a range from −0.58 to +2.37 ‰, relative to the Vienna Pee Dee Belemnite standard. The mean of the absolute differences between samples collected in duplicate in the same container type during both cruises and measured consecutively is 0.10 ‰, which corresponds to a 1σ uncertainty of 0.09 ‰, and which is within the range reported by other published studies of this kind. A crossover analysis was performed with nearby historical δ13CDIC data, indicating that any systematic offsets between our measurements and previously published results are negligible. Data doi:10.5285/09760a3a-c2b5-250b-e053-6c86abc037c0 (northeastern Atlantic), doi:10.5285/09511dd0-51db-0e21-e053-6c86abc09b95 (Nordic Seas).

  • Open Access
    Authors: 
    Gordon N. Inglis; Margaret E. Collinson; Walter Riegel; Volker Wilde; Alexander Farnsworth; Daniel J. Lunt; Paul J. Valdes; Brittany E. Robson; Andrew C. Scott; Olaf K. Lenz; +2 more
    Publisher: Elsevier BV
    Country: United Kingdom
    Project: UKRI | The Descent into the Iceh... (NE/I005714/1), UKRI | Cretaceous-Paleocene-Eoce... (NE/K012479/1), EC | TGRES (340923)

    Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are increasingly used to reconstruct mean annual air temperature (MAAT) during the early Paleogene. However, the application of this proxy in coal deposits is limited and brGDGTs have only been detected in immature coals (i.e. lignites). Using samples recovered from Schöningen, Germany (∼48°N palaeolatitude), we provide the first detailed study into the occurrence and distribution of brGDGTs through a sequence of early Eocene lignites and associated interbeds. BrGDGTs are abundant and present in every sample. In comparison to modern studies, changes in vegetation type do not appear to significantly impact brGDGT distributions; however, there are subtle differences between lignites – representing peat-forming environments – and siliciclastic nearshore marine interbed depositional environments. Using the most recent brGDGT temperature calibration (MATmr) developed for soils, we generate the first continental temperature record from central-western continental Europe through the early Eocene. Lignite-derived MAAT estimates range from 23 to 26 °C while those derived from the nearshore marine interbeds exceed 20 °C. These estimates are consistent with other mid-latitude environments and model simulations, indicating enhanced mid-latitude, early Eocene warmth. In the basal part of the section studied, warming is recorded in both the lignites (∼2 °C) and nearshore marine interbeds (∼2–3 °C). This culminates in a long-term temperature maximum, likely including the Early Eocene Climatic Optimum (EECO). Although this long-term warming trend is relatively well established in the marine realm, it has rarely been shown in terrestrial settings. Using a suite of model simulations we show that the magnitude of warming at Schöningen is broadly consistent with a doubling of CO2, in agreement with late Paleocene and early Eocene pCO2 estimates.

  • Publication . Article . Other literature type . Preprint . 2020
    Open Access
    Authors: 
    Yasunori Watanabe; Zachary T. Berndsen; Jayna Raghwani; Gemma E. Seabright; Joel D. Allen; Oliver G. Pybus; Jason S. McLellan; Ian A. Wilson; Thomas A. Bowden; Andrew B. Ward; +1 more
    Publisher: Cold Spring Harbor Laboratory
    Country: United Kingdom
    Project: NIH | Structure, Function and A... (5R01AI127521-03), WT | Human Genetics and Diseas... (203141), NIH | Exploiting Vulnerability ... (1R56AI127371-01), UKRI | The Language of Zoonosis:... (MR/S007555/1)

    Severe acute respiratory syndrome (SARS) and Middle East respiratory syndrome (MERS) coronaviruses (CoVs) are zoonotic pathogens with high fatality rates and pandemic potential. Vaccine development focuses on the principal target of the neutralizing humoral immune response, the spike (S) glycoprotein. Coronavirus S proteins are extensively glycosylated, encoding around 66–87 N-linked glycosylation sites per trimeric spike. Here, we reveal a specific area of high glycan density on MERS S that results in the formation of oligomannose-type glycan clusters, which were absent on SARS and HKU1 CoVs. We provide a comparison of the global glycan density of coronavirus spikes with other viral proteins including HIV-1 envelope, Lassa virus glycoprotein complex, and influenza hemagglutinin, where glycosylation plays a known role in shielding immunogenic epitopes. Overall, our data reveal how organisation of glycosylation across class I viral fusion proteins influence not only individual glycan compositions but also the immunological pressure across the protein surface. Glycosylation plays a key role in shielding of immunogenic epitopes on viral spike (S) proteins. Here Watanabe et al. report that glycans of coronavirus SARS and MERS S proteins are heterogeneously distributed and do not form an efficacious high-density global shield which would ensure efficient immune evasion.

  • Open Access
    Authors: 
    Matthias Feinaeugle; Daniel J. Heath; Benjamin Mills; James A. Grant-Jacob; Goran Z. Mashanovich; Robert W. Eason;
    Publisher: Springer Science and Business Media LLC
    Country: United Kingdom
    Project: UKRI | Integrated Photonic Mater... (EP/J008052/1), UKRI | Digital Multimirror Devic... (EP/L022230/1)

    Femtosecond laser-induced backward transfer of transparent photopolymers is demonstrated in the solid state, assisted by a digital micromirror spatial light modulator for producing shaped deposits. Through use of an absorbing silicon carrier substrate, we have been able to successfully transfer solid-phase material, with lateral dimensions as small as ~6 microns. In addition, a carrier of silicon incorporating a photonic waveguide relief structure enables the transfer of imprinted deposits that have been accomplished with surface features exactly complementing those present on the substrate, with an observed minimum feature size of 140 nm.

  • Open Access
    Authors: 
    Yena Song; John Preston; David Ogilvie;
    Country: United Kingdom
    Project: UKRI | Measuring and Evaluating ... (EP/G00059X/1)

    Heavy dependency on car use leads to traffic congestion, pollution, and physical inactivity, which impose high direct and indirect costs on society. Promoting walking and cycling has been recognised as one of the means of mitigating such negative effects. Various approaches have been taken to enhance walking and cycling levels and to reduce the use of automobiles. This paper examines the effectiveness of infrastructure interventions in promoting walking and cycling for transport. Two related sets of panel data, covering elapsed time periods of one and two years, were analysed to track changes in travel behaviour following provision of new walking and cycling infrastructure so that modal shift from private car use to walking and cycling can be investigated. Two types of exposure measures were tested: distance from the infrastructure (a measure of potential usage), and actual usage of the infrastructure. Only the latter measure was statistically significantly associated with modal shift. This in turn suggested that infrastructure provision was not a sufficient condition for modal shift, but may have been a necessary condition. Along with the use of new infrastructure, the loss of employment, higher education, being male and being part of the ethnic majority were consistently found to be significantly and positively associated with modal shift towards walking and cycling. The findings of this study support the construction of walking and cycling routes, but also suggest that such infrastructure alone may not be enough to promote active travel.

  • Open Access English
    Authors: 
    Ulrich Sternberg; Raiker Witter; Ilya Kuprov; Jonathan M. Lamley; Andres Oss; Józef R. Lewandowski; Ago Samoson;
    Publisher: Academic Press
    Countries: United Kingdom, Germany, United Kingdom
    Project: UKRI | Biophysical basis for the... (BB/L022761/1), EC | complexNMR (639907), UKRI | 100 kHz magic angle spinn... (EP/L025906/1)

    Recent developments in magic angle spinning (MAS) technology permit spinning frequencies of ≥100 kHz. We examine the effect of such fast MAS rates upon nuclear magnetic resonance proton line widths in the multi-spin system of β-Asp-Ala crystal. We perform powder pattern simulations employing Fokker-Plank approach with periodic boundary conditions and 1H-chemical shift tensors calculated using the bond polarization theory. The theoretical predictions mirror well the experimental results. Both approaches demonstrate that homogeneous broadening has a linear-quadratic dependency on the inverse of the MAS spinning frequency and that, at the faster end of the spinning frequencies, the residual spectral line broadening becomes dominated by chemical shift distributions and susceptibility effects even for crystalline systems.

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