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description Publicationkeyboard_double_arrow_right Preprint 2006 EnglishAuthors: Leviatan, A.;Leviatan, A.;Properties of quantum shape-phase transitions in finite nuclei are considered in the framework of the interacting boson model. Special emphasis is paid to the dynamics at the critical-point of a general first-order phase transition. Comment: 5 pages, 3 figures, Proc. Int. Conf. on ``Frontiers in Nuclear Structure, Astrophysics and Reactions: FINUSTAR'', Sep. 12-17, 2005, Kos, Greece
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For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Preprint 2017 EnglishAuthors: Meir, Reshef; Ma, Hongyao; Robu, Valentin;Meir, Reshef; Ma, Hongyao; Robu, Valentin;Power companies such as Southern California Edison (SCE) uses Demand Response (DR) contracts to incentivize consumers to reduce their power consumption during periods when demand forecast exceeds supply. Current mechanisms in use offer contracts to consumers independent of one another, do not take into consideration consumers' heterogeneity in consumption profile or reliability, and fail to achieve high participation. We introduce DR-VCG, a new DR mechanism that offers a flexible set of contracts (which may include the standard SCE contracts) and uses VCG pricing. We prove that DR-VCG elicits truthful bids, incentivizes honest preparation efforts, enables efficient computation of allocation and prices. With simple fixed-penalty contracts, the optimization goal of the mechanism is an upper bound on probability that the reduction target is missed. Extensive simulations show that compared to the current mechanism deployed in by SCE, the DR-VCG mechanism achieves higher participation, increased reliability, and significantly reduced total expenses. Comment: full version of paper accepted to IJCAI'17
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For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Preprint 2005 EnglishAuthors: Frankfurt, L.; Strikman, M.; Weiss, C.;Frankfurt, L.; Strikman, M.; Weiss, C.;We summarize the lessons learned from studies of hard scattering processes in high-energy electron-proton collisions at HERA and antiproton-proton collisions at the Tevatron, with the aim of predicting new strong interaction phenomena observable in next-generation experiments at the Large Hadron Collider (LHC). Processes reviewed include inclusive deep-inelastic scattering (DIS) at small x, exclusive and diffractive processes in DIS and hadron-hadron scattering, as well as color transparency and nuclear shadowing effects. A unified treatment of these processes is outlined, based on factorization theorems of quantum chromodynamics, and using the correspondence between the "parton" picture in the infinite-momentum frame and the "dipole" picture of high-energy processes in the target rest frame. The crucial role of the three-dimensional quark and gluon structure of the nucleon is emphasized. A new dynamical effect predicted at high energies is the unitarity, or black disk, limit (BDL) in the interaction of small dipoles with hadronic matter, due to the increase of the gluon density at small x. This effect is marginally visible in diffractive DIS at HERA and will lead to the complete disappearance of Bjorken scaling at higher energies. In hadron-hadron scattering at LHC energies and beyond (cosmic ray physics), the BDL will be a standard feature of the dynamics, with implications for (a) hadron production at forward and central rapidities in central proton-proton and proton-nucleus collisions, in particular events with heavy particle production (Higgs), (b) proton-proton elastic scattering, (c) heavy-ion collisions. We also outline the possibilities for studies of diffractive processes and photon-induced reactions (ultraperipheral collisions) at LHC, as well as possible measurements with a future electron-ion collider. Comment: 64 pages, 20 figures. Review prepared for Annu. Rev. Nucl. Part. Sci
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For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Preprint 2020American Chemical Society (ACS) Ofir Schuster; Anat Zvi; Osnat Rosen; Hagit Achdout; Amir Ben-Shmuel; Ohad Shifman; Shmuel Yitzhaki; Orly Laskar; Liron Feldberg;This study describes the development of a novel assay for SARS-CoV-2 identification using LC-MS/MS analysis. A multi-step procedure for the rational down-selection of a set of markers has leaded to the discovery of six SARS-CoV-2 specific and sensitive markers, enabling the reliable identification of the virus. A rapid and simple assay was developed, successfully applied to clinical nasopharyngeal samples. The assay may potentially serve as a complementary approach for SARS-CoV-2 identification.
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For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Preprint 2020Cold Spring Harbor Laboratory Moshe Goldsmith; Barad S; Knafo M; Alon Savidor; Shifra Ben-Dor; Alexander Brandis; Tevie Mehlman; Yoav Peleg; Shira Albeck; Orly Dym; Efrat Ben-Zeev; Ziv Reich;AbstractGrass pea (Lathyrus sativusL.) is a grain legume commonly grown in parts of Asia and Africa for food and forage. While being a highly nutritious and robust crop, able to survive both drought and floods, it produces a neurotoxic compound, β-N-oxalyl-L-α,β-diaminopropionic acid (β-ODAP), which can cause a severe neurological disorder if consumed as a main diet component. So far, the enzyme that catalyzes the formation of β-ODAP has not been identified. By combining protein purification and enzymatic assays with transcriptomic and proteomic analyses, we were able to identify the enzyme β-ODAP synthetase (BOS) from grass pea. We show that BOS is an HXXXD-type acyltransferase of the BAHD superfamily and that its crystal structure is highly similar to that of plant hydroxycinnamoyl transferases. The identification of BOS, more than 50 years after it was proposed, paves the way towards the generation of non-toxic grass pea cultivars safe for human and animal consumption.
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For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Preprint 2018 EnglishIchikawa, Kohei; Ricci, Claudio; Ueda, Yoshihiro; Bauer, Franz E.; Kawamuro, Taiki; Koss, Michael J.; Oh, Kyuseok; Rosario, David J.; Shimizu, T. Taro; Stalevski, Marko; Fuller, Lindsay; Packham, Christopher; Trakhtenbrot, Benny;We quantify the luminosity contribution of active galactic nuclei (AGN) to the 12 $\mu$m, mid-infrared (MIR; 5-38 $\mu$m), and the total IR (5-1000 $\mu$m) emission in the local AGN detected in the all-sky 70-month Swift/Burst Alert Telescope (BAT) ultra hard X-ray survey. We decompose the IR spectral energy distributions (SEDs) of 587 objects into AGN and starburst components using AGN torus and star-forming galaxy templates. This enables us to recover the AGN torus emission also for low-luminosity end, down to $\log (L_{14-150}/{\rm erg}~{\rm s}^{-1}) \simeq 41$, which typically have significant host galaxy contamination. We find that the luminosity contribution of the AGN to the 12 $\mu$m, the MIR, and the total IR band is an increasing function of the 14-150 keV luminosity. We also find that for the most extreme cases, the IR pure-AGN emission from the torus can extend up to 90 $\mu$m. The obtained total IR AGN luminosity through the IR SED decomposition enables us to estimate the fraction of the sky obscured by dust, i.e., the dust covering factor. We demonstrate that the median of the dust covering factor is always smaller than that of the X-ray obscuration fraction above the AGN bolometric luminosity of $\log (L_{\rm bol}/{\rm erg}~{\rm s}^{-1}) \simeq 42.5$. Considering that X-ray obscuration fraction is equivalent to the covering factor coming from both the dust and gas, it indicates that an additional neutral gas component, along with the dusty torus, is responsible for the absorption of X-ray emission. Comment: 21 pages, 15 figures, accepted for publication in ApJ. The full list of Table 1 is available at http://www.kusastro.kyoto-u.ac.jp/~ichikawa/Table1_MR_20181107.txt
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For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Preprint 2015 English EC | SMSEEAuthors: Bel, G.; Connaughton, C. P.; Toots, M.; Bandi, M. M.;Bel, G.; Connaughton, C. P.; Toots, M.; Bandi, M. M.;The fluctuations in wind power entering an electrical grid (Irish grid) were analyzed and found to exhibit correlated fluctuations with a self-similar structure, a signature of large-scale correlations in atmospheric turbulence. The statistical structure of temporal correlations for fluctuations in generated and forecast time series was used to quantify two types of forecast error: a timescale error ($e_{\tau}$) that quantifies the deviations between the high frequency components of the forecast and the generated time series, and a scaling error ($e_{\zeta}$) that quantifies the degree to which the models fail to predict temporal correlations in the fluctuations of the generated power. With no $a$ $priori$ knowledge of the forecast models, we suggest a simple memory kernel that reduces both the timescale error ($e_{\tau}$) and the scaling error ($e_{\zeta}$).
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For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Preprint 2014 English NSF | Collaborative Research: M..., NSF | Collaborative Research: A..., UKRI | The Navier-Stokes equatio...Authors: Bessaih, Hakima; Olson, Eric; Titi, E. S.;Bessaih, Hakima; Olson, Eric; Titi, E. S.;We analyze the performance of a data-assimilation algorithm based on a linear feedback control when used with observational data that contains measurement errors. Our model problem consists of dynamics governed by the two-dimension incompressible Navier-Stokes equations, observational measurements given by finite volume elements or nodal points of the velocity field and measurement errors which are represented by stochastic noise. Under these assumptions, the data-assimilation algorithm consists of a system of stochastically forced Navier-Stokes equations. The main result of this paper provides explicit conditions on the observation density (resolution) which guarantee explicit asymptotic bounds, as the time tends to infinity, on the error between the approximate solution and the actual solutions which is corresponding to these measurements, in terms of the variance of the noise in the measurements. Specifically, such bounds are given for the the limit supremum, as the time tends to infinity, of the expected value of the $L^2$-norm and of the $H^1$ Sobolev norm of the difference between the approximating solution and the actual solution. Moreover, results on the average time error in mean are stated.
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For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Preprint 2015 EnglishAuthors: Wimmer, Martin; Gruber, Jakob; Träff, Jesper Larsson; Tsigas, Philippas;Wimmer, Martin; Gruber, Jakob; Träff, Jesper Larsson; Tsigas, Philippas;Priority queues are data structures which store keys in an ordered fashion to allow efficient access to the minimal (maximal) key. Priority queues are essential for many applications, e.g., Dijkstra's single-source shortest path algorithm, branch-and-bound algorithms, and prioritized schedulers. Efficient multiprocessor computing requires implementations of basic data structures that can be used concurrently and scale to large numbers of threads and cores. Lock-free data structures promise superior scalability by avoiding blocking synchronization primitives, but the \emph{delete-min} operation is an inherent scalability bottleneck in concurrent priority queues. Recent work has focused on alleviating this obstacle either by batching operations, or by relaxing the requirements to the \emph{delete-min} operation. We present a new, lock-free priority queue that relaxes the \emph{delete-min} operation so that it is allowed to delete \emph{any} of the $\rho+1$ smallest keys, where $\rho$ is a runtime configurable parameter. Additionally, the behavior is identical to a non-relaxed priority queue for items added and removed by the same thread. The priority queue is built from a logarithmic number of sorted arrays in a way similar to log-structured merge-trees. We experimentally compare our priority queue to recent state-of-the-art lock-free priority queues, both with relaxed and non-relaxed semantics, showing high performance and good scalability of our approach. Comment: Short version as ACM PPoPP'15 poster
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For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Preprint 2018Cold Spring Harbor Laboratory Mirko Pegoraro; Laura M. M. Flavell; Pamela Menegazzi; Colombi P; Pauline Dao; Charlotte Helfrich-Förster; Eran Tauber;doi: 10.1101/380733
AbstractMost animals restrict their activity to a specific part of the day, being diurnal, nocturnal or crepuscular. The genetic basis underlying diurnal preference is largely unknown. Under laboratory conditions, Drosophila melanogaster is crepuscular, showing a bi-modal activity profile. However, a survey of strains derived from wild populations indicated that high variability among individuals exists, with diurnal and nocturnal flies being observed. Using a highly diverse population, we have carried out an artificial selection experiment, selecting flies with extreme diurnal or nocturnal preference. After 10 generations, we obtained highly diurnal and nocturnal strains. We used whole-genome expression analysis to identify differentially expressed genes in diurnal, nocturnal and crepuscular (control) flies. Other than one circadian clock gene (pdp1), most differentially expressed genes were associated with either clock output (pdf, to) or input (Rh3, Rh2, msn). This finding was congruent with behavioural experiments indicating that both light masking and the circadian pacemaker are involved in driving nocturnality. The diurnal and nocturnal selection strains provide us with a unique opportunity to understand the genetic architecture of diurnal preference.
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description Publicationkeyboard_double_arrow_right Preprint 2006 EnglishAuthors: Leviatan, A.;Leviatan, A.;Properties of quantum shape-phase transitions in finite nuclei are considered in the framework of the interacting boson model. Special emphasis is paid to the dynamics at the critical-point of a general first-order phase transition. Comment: 5 pages, 3 figures, Proc. Int. Conf. on ``Frontiers in Nuclear Structure, Astrophysics and Reactions: FINUSTAR'', Sep. 12-17, 2005, Kos, Greece
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For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Preprint 2017 EnglishAuthors: Meir, Reshef; Ma, Hongyao; Robu, Valentin;Meir, Reshef; Ma, Hongyao; Robu, Valentin;Power companies such as Southern California Edison (SCE) uses Demand Response (DR) contracts to incentivize consumers to reduce their power consumption during periods when demand forecast exceeds supply. Current mechanisms in use offer contracts to consumers independent of one another, do not take into consideration consumers' heterogeneity in consumption profile or reliability, and fail to achieve high participation. We introduce DR-VCG, a new DR mechanism that offers a flexible set of contracts (which may include the standard SCE contracts) and uses VCG pricing. We prove that DR-VCG elicits truthful bids, incentivizes honest preparation efforts, enables efficient computation of allocation and prices. With simple fixed-penalty contracts, the optimization goal of the mechanism is an upper bound on probability that the reduction target is missed. Extensive simulations show that compared to the current mechanism deployed in by SCE, the DR-VCG mechanism achieves higher participation, increased reliability, and significantly reduced total expenses. Comment: full version of paper accepted to IJCAI'17
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For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Preprint 2005 EnglishAuthors: Frankfurt, L.; Strikman, M.; Weiss, C.;Frankfurt, L.; Strikman, M.; Weiss, C.;We summarize the lessons learned from studies of hard scattering processes in high-energy electron-proton collisions at HERA and antiproton-proton collisions at the Tevatron, with the aim of predicting new strong interaction phenomena observable in next-generation experiments at the Large Hadron Collider (LHC). Processes reviewed include inclusive deep-inelastic scattering (DIS) at small x, exclusive and diffractive processes in DIS and hadron-hadron scattering, as well as color transparency and nuclear shadowing effects. A unified treatment of these processes is outlined, based on factorization theorems of quantum chromodynamics, and using the correspondence between the "parton" picture in the infinite-momentum frame and the "dipole" picture of high-energy processes in the target rest frame. The crucial role of the three-dimensional quark and gluon structure of the nucleon is emphasized. A new dynamical effect predicted at high energies is the unitarity, or black disk, limit (BDL) in the interaction of small dipoles with hadronic matter, due to the increase of the gluon density at small x. This effect is marginally visible in diffractive DIS at HERA and will lead to the complete disappearance of Bjorken scaling at higher energies. In hadron-hadron scattering at LHC energies and beyond (cosmic ray physics), the BDL will be a standard feature of the dynamics, with implications for (a) hadron production at forward and central rapidities in central proton-proton and proton-nucleus collisions, in particular events with heavy particle production (Higgs), (b) proton-proton elastic scattering, (c) heavy-ion collisions. We also outline the possibilities for studies of diffractive processes and photon-induced reactions (ultraperipheral collisions) at LHC, as well as possible measurements with a future electron-ion collider. Comment: 64 pages, 20 figures. Review prepared for Annu. Rev. Nucl. Part. Sci
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For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Preprint 2020American Chemical Society (ACS) Ofir Schuster; Anat Zvi; Osnat Rosen; Hagit Achdout; Amir Ben-Shmuel; Ohad Shifman; Shmuel Yitzhaki; Orly Laskar; Liron Feldberg;This study describes the development of a novel assay for SARS-CoV-2 identification using LC-MS/MS analysis. A multi-step procedure for the rational down-selection of a set of markers has leaded to the discovery of six SARS-CoV-2 specific and sensitive markers, enabling the reliable identification of the virus. A rapid and simple assay was developed, successfully applied to clinical nasopharyngeal samples. The assay may potentially serve as a complementary approach for SARS-CoV-2 identification.
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You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.26434/chemrxiv.13055873&type=result"></script>'); --> </script>
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more_vert https://doi.org/10.2... arrow_drop_down add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.26434/chemrxiv.13055873&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Preprint 2020Cold Spring Harbor Laboratory Moshe Goldsmith; Barad S; Knafo M; Alon Savidor; Shifra Ben-Dor; Alexander Brandis; Tevie Mehlman; Yoav Peleg; Shira Albeck; Orly Dym; Efrat Ben-Zeev; Ziv Reich;AbstractGrass pea (Lathyrus sativusL.) is a grain legume commonly grown in parts of Asia and Africa for food and forage. While being a highly nutritious and robust crop, able to survive both drought and floods, it produces a neurotoxic compound, β-N-oxalyl-L-α,β-diaminopropionic acid (β-ODAP), which can cause a severe neurological disorder if consumed as a main diet component. So far, the enzyme that catalyzes the formation of β-ODAP has not been identified. By combining protein purification and enzymatic assays with transcriptomic and proteomic analyses, we were able to identify the enzyme β-ODAP synthetase (BOS) from grass pea. We show that BOS is an HXXXD-type acyltransferase of the BAHD superfamily and that its crystal structure is highly similar to that of plant hydroxycinnamoyl transferases. The identification of BOS, more than 50 years after it was proposed, paves the way towards the generation of non-toxic grass pea cultivars safe for human and animal consumption.
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
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more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1101/2020.11.29.402396&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Preprint 2018 EnglishIchikawa, Kohei; Ricci, Claudio; Ueda, Yoshihiro; Bauer, Franz E.; Kawamuro, Taiki; Koss, Michael J.; Oh, Kyuseok; Rosario, David J.; Shimizu, T. Taro; Stalevski, Marko; Fuller, Lindsay; Packham, Christopher; Trakhtenbrot, Benny;We quantify the luminosity contribution of active galactic nuclei (AGN) to the 12 $\mu$m, mid-infrared (MIR; 5-38 $\mu$m), and the total IR (5-1000 $\mu$m) emission in the local AGN detected in the all-sky 70-month Swift/Burst Alert Telescope (BAT) ultra hard X-ray survey. We decompose the IR spectral energy distributions (SEDs) of 587 objects into AGN and starburst components using AGN torus and star-forming galaxy templates. This enables us to recover the AGN torus emission also for low-luminosity end, down to $\log (L_{14-150}/{\rm erg}~{\rm s}^{-1}) \simeq 41$, which typically have significant host galaxy contamination. We find that the luminosity contribution of the AGN to the 12 $\mu$m, the MIR, and the total IR band is an increasing function of the 14-150 keV luminosity. We also find that for the most extreme cases, the IR pure-AGN emission from the torus can extend up to 90 $\mu$m. The obtained total IR AGN luminosity through the IR SED decomposition enables us to estimate the fraction of the sky obscured by dust, i.e., the dust covering factor. We demonstrate that the median of the dust covering factor is always smaller than that of the X-ray obscuration fraction above the AGN bolometric luminosity of $\log (L_{\rm bol}/{\rm erg}~{\rm s}^{-1}) \simeq 42.5$. Considering that X-ray obscuration fraction is equivalent to the covering factor coming from both the dust and gas, it indicates that an additional neutral gas component, along with the dusty torus, is responsible for the absorption of X-ray emission. Comment: 21 pages, 15 figures, accepted for publication in ApJ. The full list of Table 1 is available at http://www.kusastro.kyoto-u.ac.jp/~ichikawa/Table1_MR_20181107.txt
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For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Preprint 2015 English EC | SMSEEAuthors: Bel, G.; Connaughton, C. P.; Toots, M.; Bandi, M. M.;Bel, G.; Connaughton, C. P.; Toots, M.; Bandi, M. M.;The fluctuations in wind power entering an electrical grid (Irish grid) were analyzed and found to exhibit correlated fluctuations with a self-similar structure, a signature of large-scale correlations in atmospheric turbulence. The statistical structure of temporal correlations for fluctuations in generated and forecast time series was used to quantify two types of forecast error: a timescale error ($e_{\tau}$) that quantifies the deviations between the high frequency components of the forecast and the generated time series, and a scaling error ($e_{\zeta}$) that quantifies the degree to which the models fail to predict temporal correlations in the fluctuations of the generated power. With no $a$ $priori$ knowledge of the forecast models, we suggest a simple memory kernel that reduces both the timescale error ($e_{\tau}$) and the scaling error ($e_{\zeta}$).
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For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Preprint 2014 English NSF | Collaborative Research: M..., NSF | Collaborative Research: A..., UKRI | The Navier-Stokes equatio...Authors: Bessaih, Hakima; Olson, Eric; Titi, E. S.;Bessaih, Hakima; Olson, Eric; Titi, E. S.;We analyze the performance of a data-assimilation algorithm based on a linear feedback control when used with observational data that contains measurement errors. Our model problem consists of dynamics governed by the two-dimension incompressible Navier-Stokes equations, observational measurements given by finite volume elements or nodal points of the velocity field and measurement errors which are represented by stochastic noise. Under these assumptions, the data-assimilation algorithm consists of a system of stochastically forced Navier-Stokes equations. The main result of this paper provides explicit conditions on the observation density (resolution) which guarantee explicit asymptotic bounds, as the time tends to infinity, on the error between the approximate solution and the actual solutions which is corresponding to these measurements, in terms of the variance of the noise in the measurements. Specifically, such bounds are given for the the limit supremum, as the time tends to infinity, of the expected value of the $L^2$-norm and of the $H^1$ Sobolev norm of the difference between the approximating solution and the actual solution. Moreover, results on the average time error in mean are stated.
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For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Preprint 2015 EnglishAuthors: Wimmer, Martin; Gruber, Jakob; Träff, Jesper Larsson; Tsigas, Philippas;Wimmer, Martin; Gruber, Jakob; Träff, Jesper Larsson; Tsigas, Philippas;Priority queues are data structures which store keys in an ordered fashion to allow efficient access to the minimal (maximal) key. Priority queues are essential for many applications, e.g., Dijkstra's single-source shortest path algorithm, branch-and-bound algorithms, and prioritized schedulers. Efficient multiprocessor computing requires implementations of basic data structures that can be used concurrently and scale to large numbers of threads and cores. Lock-free data structures promise superior scalability by avoiding blocking synchronization primitives, but the \emph{delete-min} operation is an inherent scalability bottleneck in concurrent priority queues. Recent work has focused on alleviating this obstacle either by batching operations, or by relaxing the requirements to the \emph{delete-min} operation. We present a new, lock-free priority queue that relaxes the \emph{delete-min} operation so that it is allowed to delete \emph{any} of the $\rho+1$ smallest keys, where $\rho$ is a runtime configurable parameter. Additionally, the behavior is identical to a non-relaxed priority queue for items added and removed by the same thread. The priority queue is built from a logarithmic number of sorted arrays in a way similar to log-structured merge-trees. We experimentally compare our priority queue to recent state-of-the-art lock-free priority queues, both with relaxed and non-relaxed semantics, showing high performance and good scalability of our approach. Comment: Short version as ACM PPoPP'15 poster
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For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Preprint 2018Cold Spring Harbor Laboratory Mirko Pegoraro; Laura M. M. Flavell; Pamela Menegazzi; Colombi P; Pauline Dao; Charlotte Helfrich-Förster; Eran Tauber;doi: 10.1101/380733
AbstractMost animals restrict their activity to a specific part of the day, being diurnal, nocturnal or crepuscular. The genetic basis underlying diurnal preference is largely unknown. Under laboratory conditions, Drosophila melanogaster is crepuscular, showing a bi-modal activity profile. However, a survey of strains derived from wild populations indicated that high variability among individuals exists, with diurnal and nocturnal flies being observed. Using a highly diverse population, we have carried out an artificial selection experiment, selecting flies with extreme diurnal or nocturnal preference. After 10 generations, we obtained highly diurnal and nocturnal strains. We used whole-genome expression analysis to identify differentially expressed genes in diurnal, nocturnal and crepuscular (control) flies. Other than one circadian clock gene (pdp1), most differentially expressed genes were associated with either clock output (pdf, to) or input (Rh3, Rh2, msn). This finding was congruent with behavioural experiments indicating that both light masking and the circadian pacemaker are involved in driving nocturnality. The diurnal and nocturnal selection strains provide us with a unique opportunity to understand the genetic architecture of diurnal preference.
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You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
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