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435 Research products, page 1 of 44

  • Research data
  • Other research products
  • 2018-2022
  • Dataset
  • Netherlands Organisation for Scientific Research (NWO)

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  • Open Access
    Authors: 
    Rashan Haniffa; Ilhaam Isaam; A. De Silva; Dondorp, Arjen; Keizer, Nicolette De;
    Publisher: figshare
    Project: NWO | MEDEA+ - 2007 (2300150819)

    A table presenting the checklist for critical appraisal and data extraction for systematic reviews of prediction modelling studies. (XLSX 41 kb)

  • Open Access
    Authors: 
    Shuaimin Chen; Tatoba Waghmode; Ruibo Sun; Kuramae, Eiko; Chunsheng Hu; Binbin Liu;
    Publisher: figshare
    Project: NWO | Harnessing the rhizospher... (2300183948)

    Additional file 4. Dominant fungal orders (relative abundance > 1%) in the rhizosphere and root samples.

  • Open Access
    Authors: 
    Ebbert, Mark; Jensen, Tanner; Jansen-West, Karen; Sens, Jonathon; Reddy, Joseph; Ridge, Perry; Kauwe, John; Belzil, Veronique; Pregent, Luc; Carrasquillo, Minerva; +10 more
    Publisher: figshare
    Project: NIH | Large Scale Genome Sequen... (3U54HG003079-03S1), NIH | Identification and charac... (5U01AG052411-03), NIH | PRECURSORS OF STROKE INCI... (5R01NS017950-05), NIH | Sequence-based Discovery ... (5U01AG049506-02), NIH | Development and character... (5R03AG049992-02), EC | ENGAGE (201413), NIH | Building on GWAS for NHLB... (1RC2HL102419-01), NIH | Functions of human and mo... (5R21AG047327-02), NIH | CORONARY HEART DISEASE AN... (N01HC085079-023), NIH | COGNITIVE TESTS, APOE, BR... (1R01AG015928-01),...

    IlluminaRL100 percent dark genes in hg38. (TXT 401 kb)

  • Open Access
    Authors: 
    Strepis, Nikolaos; Naranjo, Henry; Meier-Kolthoff, Jan; Göker, Markus; Shapiro, Nicole; Kyrpides, Nikos; Hans-Peter Klenk; Schaap, Peter; Stams, Alfons; Sousa, Diana;
    Publisher: figshare
    Project: NWO | Microbes for health and e... (2300181602), EC | NOVEL ANAEROBES (323009)

    Additional file 2. SAPP-generated protein domain matrix. XLSX 628 kb.

  • Open Access
    Authors: 
    Schymanski, Emma; Bolton, Evan; Cheng, Tiejun; Thiessen, Paul; Zhang, Jian (Jeff); Helmus, Rick; Blanke, Gerd;
    Publisher: Zenodo
    Project: NWO | WEDACS (Waste Energy Driv... (2300154962)

    This is an archive of the data contained in the "Transformations" section in PubChem for integration into patRoon and other workflows. For further details see the ECI GitLab site: README and main "tps" folder. Credits: Concepts: E Schymanski, E Bolton, J Zhang, T Cheng; Code (in R): E Schymanski, R Helmus, P Thiessen Transformations: E Schymanski, J Zhang, T Cheng and many contributors to various lists! PubChem infrastructure: PubChem team Reaction InChI (RInChI) calculations (v1.0): Gerd Blanke Acknowledgements: ECI team who contributed to related efforts, especially: J. Krier, A. Lai, M. Narayanan, T. Kondic, P. Chirsir. All contributors to the NORMAN-SLE transformations! These files are in active development; formats may change in future versions

  • Open Access
    Authors: 
    Kluin, Roelof; Kemper, Kristel; Kuilman, Thomas; Ruiter, Julian De; Iyer, Vivek; Forment, Josep; Cornelissen-Steijger, Paulien; Rink, Iris De; Brugge, Petra Ter; Song, Ji-Ying; +7 more
    Publisher: figshare
    Project: WT | Wellcome Trust Sanger Ins... (098051), EC | COMBATCANCER (319661), NWO | Curing seed potato tubers... (2300151956)

    Table S1. WGS of mouse strains mapped to human. Number of sequence reads from 3 mouse strains mapped to human genes (Tab. 1) and exons (Tab. 2). (XLSX 11940 kb)

  • Open Access
    Authors: 
    Hop, Paul J.; Luijk, René; Daxinger, Lucia; Iterson, Maarten Van; Dekkers, Koen F.; Jansen, Rick; Meurs, Joyce B. J. Van; Peter A. C. ’T Hoen; M. Arfan Ikram; Greevenbroek, Marleen M. J. Van; +5 more
    Publisher: figshare
    Project: NWO | BBMRI-NL2.0: The NL-Bioba... (2300184368), NWO | BBMRI-NL (2300154272)

    Additional file 12: Table S12. Transcription factor binding site enrichments, includes the overlap between target CpGs and ChIP-seq peaks for each experiment, the overlap between the background regions and the ChIP-seq peaks, and the enrichment statistics (Fisher’s exact test).

  • Open Access
    Authors: 
    Hop, Paul J.; Luijk, René; Daxinger, Lucia; Iterson, Maarten Van; Dekkers, Koen F.; Jansen, Rick; Meurs, Joyce B. J. Van; Peter A. C. ’T Hoen; M. Arfan Ikram; Greevenbroek, Marleen M. J. Van; +5 more
    Publisher: figshare
    Project: NWO | BBMRI-NL (2300154272), NWO | BBMRI-NL2.0: The NL-Bioba... (2300184368)

    Additional file 3: Table S3. Associations between GIs and trans CpGs that remained significant (P < 1.4 x 10-11) after taking LD/pleiotropy among neighboring genes into account.

  • Open Access
    Authors: 
    Garza, Daniel; Rahwa Taddese; Wirbel, Jakob; Zeller, Georg; Boleij, Annemarie; Huynen, Martijn; Dutilh, Bas;
    Publisher: figshare
    Project: NWO | XCiDE: Crossing the Combu... (2300153186)

    Additional file 3 Table S3. Important metabolites for GSMMs.

  • English
    Authors: 
    Jumde, Ravindra P.; Lanza, Francesco; Pellegrini, Tilde; Harutyunyan, Syuzanna R.;
    Publisher: Cambridge Crystallographic Data Centre
    Project: NWO | Research Centre for Funct... (2300176518)

    An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures. Related Article: Ravindra P. Jumde, Francesco Lanza, Tilde Pellegrini, Syuzanna R. Harutyunyan|2017|Nat.Commun.|8|2058|doi:10.1038/s41467-017-01966-7

Advanced search in
Research products
arrow_drop_down
Searching FieldsTerms
Any field
arrow_drop_down
includes
arrow_drop_down
Include:
435 Research products, page 1 of 44
  • Open Access
    Authors: 
    Rashan Haniffa; Ilhaam Isaam; A. De Silva; Dondorp, Arjen; Keizer, Nicolette De;
    Publisher: figshare
    Project: NWO | MEDEA+ - 2007 (2300150819)

    A table presenting the checklist for critical appraisal and data extraction for systematic reviews of prediction modelling studies. (XLSX 41 kb)

  • Open Access
    Authors: 
    Shuaimin Chen; Tatoba Waghmode; Ruibo Sun; Kuramae, Eiko; Chunsheng Hu; Binbin Liu;
    Publisher: figshare
    Project: NWO | Harnessing the rhizospher... (2300183948)

    Additional file 4. Dominant fungal orders (relative abundance > 1%) in the rhizosphere and root samples.

  • Open Access
    Authors: 
    Ebbert, Mark; Jensen, Tanner; Jansen-West, Karen; Sens, Jonathon; Reddy, Joseph; Ridge, Perry; Kauwe, John; Belzil, Veronique; Pregent, Luc; Carrasquillo, Minerva; +10 more
    Publisher: figshare
    Project: NIH | Large Scale Genome Sequen... (3U54HG003079-03S1), NIH | Identification and charac... (5U01AG052411-03), NIH | PRECURSORS OF STROKE INCI... (5R01NS017950-05), NIH | Sequence-based Discovery ... (5U01AG049506-02), NIH | Development and character... (5R03AG049992-02), EC | ENGAGE (201413), NIH | Building on GWAS for NHLB... (1RC2HL102419-01), NIH | Functions of human and mo... (5R21AG047327-02), NIH | CORONARY HEART DISEASE AN... (N01HC085079-023), NIH | COGNITIVE TESTS, APOE, BR... (1R01AG015928-01),...

    IlluminaRL100 percent dark genes in hg38. (TXT 401 kb)

  • Open Access
    Authors: 
    Strepis, Nikolaos; Naranjo, Henry; Meier-Kolthoff, Jan; Göker, Markus; Shapiro, Nicole; Kyrpides, Nikos; Hans-Peter Klenk; Schaap, Peter; Stams, Alfons; Sousa, Diana;
    Publisher: figshare
    Project: NWO | Microbes for health and e... (2300181602), EC | NOVEL ANAEROBES (323009)

    Additional file 2. SAPP-generated protein domain matrix. XLSX 628 kb.

  • Open Access
    Authors: 
    Schymanski, Emma; Bolton, Evan; Cheng, Tiejun; Thiessen, Paul; Zhang, Jian (Jeff); Helmus, Rick; Blanke, Gerd;
    Publisher: Zenodo
    Project: NWO | WEDACS (Waste Energy Driv... (2300154962)

    This is an archive of the data contained in the "Transformations" section in PubChem for integration into patRoon and other workflows. For further details see the ECI GitLab site: README and main "tps" folder. Credits: Concepts: E Schymanski, E Bolton, J Zhang, T Cheng; Code (in R): E Schymanski, R Helmus, P Thiessen Transformations: E Schymanski, J Zhang, T Cheng and many contributors to various lists! PubChem infrastructure: PubChem team Reaction InChI (RInChI) calculations (v1.0): Gerd Blanke Acknowledgements: ECI team who contributed to related efforts, especially: J. Krier, A. Lai, M. Narayanan, T. Kondic, P. Chirsir. All contributors to the NORMAN-SLE transformations! These files are in active development; formats may change in future versions

  • Open Access
    Authors: 
    Kluin, Roelof; Kemper, Kristel; Kuilman, Thomas; Ruiter, Julian De; Iyer, Vivek; Forment, Josep; Cornelissen-Steijger, Paulien; Rink, Iris De; Brugge, Petra Ter; Song, Ji-Ying; +7 more
    Publisher: figshare
    Project: WT | Wellcome Trust Sanger Ins... (098051), EC | COMBATCANCER (319661), NWO | Curing seed potato tubers... (2300151956)

    Table S1. WGS of mouse strains mapped to human. Number of sequence reads from 3 mouse strains mapped to human genes (Tab. 1) and exons (Tab. 2). (XLSX 11940 kb)

  • Open Access
    Authors: 
    Hop, Paul J.; Luijk, René; Daxinger, Lucia; Iterson, Maarten Van; Dekkers, Koen F.; Jansen, Rick; Meurs, Joyce B. J. Van; Peter A. C. ’T Hoen; M. Arfan Ikram; Greevenbroek, Marleen M. J. Van; +5 more
    Publisher: figshare
    Project: NWO | BBMRI-NL2.0: The NL-Bioba... (2300184368), NWO | BBMRI-NL (2300154272)

    Additional file 12: Table S12. Transcription factor binding site enrichments, includes the overlap between target CpGs and ChIP-seq peaks for each experiment, the overlap between the background regions and the ChIP-seq peaks, and the enrichment statistics (Fisher’s exact test).

  • Open Access
    Authors: 
    Hop, Paul J.; Luijk, René; Daxinger, Lucia; Iterson, Maarten Van; Dekkers, Koen F.; Jansen, Rick; Meurs, Joyce B. J. Van; Peter A. C. ’T Hoen; M. Arfan Ikram; Greevenbroek, Marleen M. J. Van; +5 more
    Publisher: figshare
    Project: NWO | BBMRI-NL (2300154272), NWO | BBMRI-NL2.0: The NL-Bioba... (2300184368)

    Additional file 3: Table S3. Associations between GIs and trans CpGs that remained significant (P < 1.4 x 10-11) after taking LD/pleiotropy among neighboring genes into account.

  • Open Access
    Authors: 
    Garza, Daniel; Rahwa Taddese; Wirbel, Jakob; Zeller, Georg; Boleij, Annemarie; Huynen, Martijn; Dutilh, Bas;
    Publisher: figshare
    Project: NWO | XCiDE: Crossing the Combu... (2300153186)

    Additional file 3 Table S3. Important metabolites for GSMMs.

  • English
    Authors: 
    Jumde, Ravindra P.; Lanza, Francesco; Pellegrini, Tilde; Harutyunyan, Syuzanna R.;
    Publisher: Cambridge Crystallographic Data Centre
    Project: NWO | Research Centre for Funct... (2300176518)

    An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures. Related Article: Ravindra P. Jumde, Francesco Lanza, Tilde Pellegrini, Syuzanna R. Harutyunyan|2017|Nat.Commun.|8|2058|doi:10.1038/s41467-017-01966-7

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