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435 Research products, page 1 of 44

Research data . 2018
Additional file 2: of Performance of critical care prognostic scoring systems in low and middle-income countries: a systematic review
Open Access
Authors:
Rashan Haniffa; Ilhaam Isaam; A. De Silva; Dondorp, Arjen; Keizer, Nicolette De;
Rashan Haniffa; Ilhaam Isaam; A. De Silva; Dondorp, Arjen; Keizer, Nicolette De;
doi: 10.6084/m9.figshare.5829945.v1 , 10.6084/m9.figshare.5829945
doi: 10.6084/m9.figshare.5829945.v1 , 10.6084/m9.figshare.5829945
Publisher: figshare
Project: NWO | MEDEA+ - 2007 (2300150819)
A table presenting the checklist for critical appraisal and data extraction for systematic reviews of prediction modelling studies. (XLSX 41 kb)
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Research data . 2019
MOESM4 of Root-associated microbiomes of wheat under the combined effect of plant development and nitrogen fertilization
Open Access
Authors:
Shuaimin Chen; Tatoba Waghmode; Ruibo Sun; Kuramae, Eiko; Chunsheng Hu; Binbin Liu;
Shuaimin Chen; Tatoba Waghmode; Ruibo Sun; Kuramae, Eiko; Chunsheng Hu; Binbin Liu;
doi: 10.6084/m9.figshare.10027532 , 10.6084/m9.figshare.10027532.v1
doi: 10.6084/m9.figshare.10027532 , 10.6084/m9.figshare.10027532.v1
Publisher: figshare
Project: NWO | Harnessing the rhizospher... (2300183948)
Additional file 4.Â Dominant fungal orders (relative abundance > 1%) in the rhizosphere and root samples.
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Research data . 2019
Additional file 2: of Systematic analysis of dark and camouflaged genes reveals disease-relevant genes hiding in plain sight
Open Access
Authors:
Ebbert, Mark; Jensen, Tanner; Jansen-West, Karen; Sens, Jonathon; Reddy, Joseph; Ridge, Perry; Kauwe, John; Belzil, Veronique; Pregent, Luc; Carrasquillo, Minerva; +10 more
Ebbert, Mark; Jensen, Tanner; Jansen-West, Karen; Sens, Jonathon; Reddy, Joseph; Ridge, Perry; Kauwe, John; Belzil, Veronique; Pregent, Luc; Carrasquillo, Minerva; Keene, Dirk; Larson, Eric; Crane, Paul; Asmann, Yan; Nilufer Ertekin-Taner; Younkin, Steven; Ross, Owen; Rademakers, Rosa; Petrucelli, Leonard; Fryer, John;
doi: 10.6084/m9.figshare.8150921 , 10.6084/m9.figshare.8150921.v1
doi: 10.6084/m9.figshare.8150921 , 10.6084/m9.figshare.8150921.v1
Publisher: figshare
Project: NIH | Large Scale Genome Sequen... (3U54HG003079-03S1), NIH | Identification and charac... (5U01AG052411-03), NIH | PRECURSORS OF STROKE INCI... (5R01NS017950-05), NIH | Sequence-based Discovery ... (5U01AG049506-02), NIH | Development and character... (5R03AG049992-02), EC | ENGAGE (201413), NIH | Building on GWAS for NHLB... (1RC2HL102419-01), NIH | Functions of human and mo... (5R21AG047327-02), NIH | CORONARY HEART DISEASE AN... (N01HC085079-023), NIH | COGNITIVE TESTS, APOE, BR... (1R01AG015928-01),...
IlluminaRL100 percent dark genes in hg38. (TXT 401 kb)
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Research data . 2020
MOESM2 of Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species
Open Access
Authors:
Strepis, Nikolaos; Naranjo, Henry; Meier-Kolthoff, Jan; Göker, Markus; Shapiro, Nicole; Kyrpides, Nikos; Hans-Peter Klenk; Schaap, Peter; Stams, Alfons; Sousa, Diana;
Strepis, Nikolaos; Naranjo, Henry; Meier-Kolthoff, Jan; Göker, Markus; Shapiro, Nicole; Kyrpides, Nikos; Hans-Peter Klenk; Schaap, Peter; Stams, Alfons; Sousa, Diana;
doi: 10.6084/m9.figshare.11557896 , 10.6084/m9.figshare.11557896.v1
doi: 10.6084/m9.figshare.11557896 , 10.6084/m9.figshare.11557896.v1
Publisher: figshare
Project: NWO | Microbes for health and e... (2300181602), EC | NOVEL ANAEROBES (323009)
Additional file 2. SAPP-generated protein domain matrix. XLSX 628 kb.
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Research data . 2022
Transformations in PubChem - Full Dataset
Open Access
Authors:
Schymanski, Emma; Bolton, Evan; Cheng, Tiejun; Thiessen, Paul; Zhang, Jian (Jeff); Helmus, Rick; Blanke, Gerd;
Schymanski, Emma; Bolton, Evan; Cheng, Tiejun; Thiessen, Paul; Zhang, Jian (Jeff); Helmus, Rick; Blanke, Gerd;
doi: 10.5281/zenodo.5644560 , 10.5281/zenodo.7089524
doi: 10.5281/zenodo.5644560 , 10.5281/zenodo.7089524
Publisher: Zenodo
Project: NWO | WEDACS (Waste Energy Driv... (2300154962)
This is an archive of the data contained in the "Transformations" section in PubChem for integration into patRoon and other workflows. For further details see the ECI GitLab site: README and main "tps" folder. Credits: Concepts: E Schymanski, E Bolton, J Zhang, T Cheng; Code (in R): E Schymanski, R Helmus, P Thiessen Transformations: E Schymanski, J Zhang, T Cheng and many contributors to various lists! PubChem infrastructure: PubChem team Reaction InChI (RInChI) calculations (v1.0): Gerd Blanke Acknowledgements: ECI team who contributed to related efforts, especially: J. Krier, A. Lai, M. Narayanan, T. Kondic, P. Chirsir. All contributors to the NORMAN-SLE transformations! These files are in active development; formats may change in future versions
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Research data . 2018
Additional file 1: of XenofilteR: computational deconvolution of mouse and human reads in tumor xenograft sequence data
Open Access
Authors:
Kluin, Roelof; Kemper, Kristel; Kuilman, Thomas; Ruiter, Julian De; Iyer, Vivek; Forment, Josep; Cornelissen-Steijger, Paulien; Rink, Iris De; Brugge, Petra Ter; Song, Ji-Ying; +7 more
Kluin, Roelof; Kemper, Kristel; Kuilman, Thomas; Ruiter, Julian De; Iyer, Vivek; Forment, Josep; Cornelissen-Steijger, Paulien; Rink, Iris De; Brugge, Petra Ter; Song, Ji-Ying; Klarenbeek, Sjoerd; McDermott, Ultan; Jonkers, Jos; Velds, Arno; Adams, David; Peeper, Daniel; Krijgsman, Oscar;
doi: 10.6084/m9.figshare.7170698.v1 , 10.6084/m9.figshare.7170698
doi: 10.6084/m9.figshare.7170698.v1 , 10.6084/m9.figshare.7170698
Publisher: figshare
Project: WT | Wellcome Trust Sanger Ins... (098051), EC | COMBATCANCER (319661), NWO | Curing seed potato tubers... (2300151956)
Table S1. WGS of mouse strains mapped to human. Number of sequence reads from 3 mouse strains mapped to human genes (Tab. 1) and exons (Tab. 2). (XLSX 11940 kb)
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Research data . 2020
Additional file 12 of Genome-wide identification of genes regulating DNA methylation using genetic anchors for causal inference
Open Access
Authors:
Hop, Paul J.; Luijk, René; Daxinger, Lucia; Iterson, Maarten Van; Dekkers, Koen F.; Jansen, Rick; Meurs, Joyce B. J. Van; Peter A. C. ’T Hoen; M. Arfan Ikram; Greevenbroek, Marleen M. J. Van; +5 more
Hop, Paul J.; Luijk, René; Daxinger, Lucia; Iterson, Maarten Van; Dekkers, Koen F.; Jansen, Rick; Meurs, Joyce B. J. Van; Peter A. C. ’T Hoen; M. Arfan Ikram; Greevenbroek, Marleen M. J. Van; Dorret I. Boomsma; P. Eline Slagboom; Veldink, Jan H.; Zwet, Erik W. Van; Heijmans, Bastiaan T.;
doi: 10.6084/m9.figshare.12891471.v1
doi: 10.6084/m9.figshare.12891471.v1
Publisher: figshare
Project: NWO | BBMRI-NL2.0: The NL-Bioba... (2300184368), NWO | BBMRI-NL (2300154272)
Additional file 12: Table S12. Transcription factor binding site enrichments, includes the overlap between target CpGs and ChIP-seq peaks for each experiment, the overlap between the background regions and the ChIP-seq peaks, and the enrichment statistics (Fisher’s exact test).
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Research data . 2020
Additional file 3 of Genome-wide identification of genes regulating DNA methylation using genetic anchors for causal inference
Open Access
Authors:
Hop, Paul J.; Luijk, René; Daxinger, Lucia; Iterson, Maarten Van; Dekkers, Koen F.; Jansen, Rick; Meurs, Joyce B. J. Van; Peter A. C. ’T Hoen; M. Arfan Ikram; Greevenbroek, Marleen M. J. Van; +5 more
Hop, Paul J.; Luijk, René; Daxinger, Lucia; Iterson, Maarten Van; Dekkers, Koen F.; Jansen, Rick; Meurs, Joyce B. J. Van; Peter A. C. ’T Hoen; M. Arfan Ikram; Greevenbroek, Marleen M. J. Van; Dorret I. Boomsma; P. Eline Slagboom; Veldink, Jan H.; Zwet, Erik W. Van; Heijmans, Bastiaan T.;
doi: 10.6084/m9.figshare.12891501
doi: 10.6084/m9.figshare.12891501
Publisher: figshare
Project: NWO | BBMRI-NL (2300154272), NWO | BBMRI-NL2.0: The NL-Bioba... (2300184368)
Additional file 3: Table S3. Associations between GIs and trans CpGs that remained significant (P < 1.4 x 10-11) after taking LD/pleiotropy among neighboring genes into account.
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Research data . 2020
Additional file 3 of Metabolic models predict bacterial passengers in colorectal cancer
Open Access
Authors:
Garza, Daniel; Rahwa Taddese; Wirbel, Jakob; Zeller, Georg; Boleij, Annemarie; Huynen, Martijn; Dutilh, Bas;
Garza, Daniel; Rahwa Taddese; Wirbel, Jakob; Zeller, Georg; Boleij, Annemarie; Huynen, Martijn; Dutilh, Bas;
doi: 10.6084/m9.figshare.11829297 , 10.6084/m9.figshare.11829297.v1
doi: 10.6084/m9.figshare.11829297 , 10.6084/m9.figshare.11829297.v1
Publisher: figshare
Project: NWO | XCiDE: Crossing the Combu... (2300153186)
Additional file 3 Table S3. Important metabolites for GSMMs.
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Research data . 2018
CCDC 1532252: Experimental Crystal Structure Determination
English
Authors:
Jumde, Ravindra P.; Lanza, Francesco; Pellegrini, Tilde; Harutyunyan, Syuzanna R.;
Jumde, Ravindra P.; Lanza, Francesco; Pellegrini, Tilde; Harutyunyan, Syuzanna R.;
doi: 10.5517/ccdc.csd.cc1nffh0
doi: 10.5517/ccdc.csd.cc1nffh0
Publisher: Cambridge Crystallographic Data Centre
Project: NWO | Research Centre for Funct... (2300176518)
An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures. Related Article: Ravindra P. Jumde, Francesco Lanza, Tilde Pellegrini, Syuzanna R. Harutyunyan|2017|Nat.Commun.|8|2058|doi:10.1038/s41467-017-01966-7
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435 Research products, page 1 of 44

Research data
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2018-2022
Dataset
Netherlands Organisation for Scientific Research (NWO)

Additional file 2: of Performance of critical care prognostic scoring systems in low and middle-income countries: a systematic review

MOESM4 of Root-associated microbiomes of wheat under the combined effect of plant development and nitrogen fertilization

Additional file 2: of Systematic analysis of dark and camouflaged genes reveals disease-relevant genes hiding in plain sight

MOESM2 of Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species

Transformations in PubChem - Full Dataset

Additional file 1: of XenofilteR: computational deconvolution of mouse and human reads in tumor xenograft sequence data

Additional file 12 of Genome-wide identification of genes regulating DNA methylation using genetic anchors for causal inference

Additional file 3 of Genome-wide identification of genes regulating DNA methylation using genetic anchors for causal inference

Additional file 3 of Metabolic models predict bacterial passengers in colorectal cancer

CCDC 1532252: Experimental Crystal Structure Determination

435 Research products, page 1 of 44

Additional file 2: of Performance of critical care prognostic scoring systems in low and middle-income countries: a systematic review

MOESM4 of Root-associated microbiomes of wheat under the combined effect of plant development and nitrogen fertilization

Additional file 2: of Systematic analysis of dark and camouflaged genes reveals disease-relevant genes hiding in plain sight

MOESM2 of Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species

Transformations in PubChem - Full Dataset

Additional file 1: of XenofilteR: computational deconvolution of mouse and human reads in tumor xenograft sequence data

Additional file 12 of Genome-wide identification of genes regulating DNA methylation using genetic anchors for causal inference

Additional file 3 of Genome-wide identification of genes regulating DNA methylation using genetic anchors for causal inference

Additional file 3 of Metabolic models predict bacterial passengers in colorectal cancer

CCDC 1532252: Experimental Crystal Structure Determination

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2018-2022
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Netherlands Organisation for Scientific Research (NWO)