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  • Netherlands Organisation for Scientific Research (NWO)

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  • English
    Authors: 
    Nuijten, Rascha J.M.; Gerrits, Theo; De Vries, Peter P.; Müskens, Gerhard J.D.M.; Nolet, Bart A.;
    Publisher: Movebank Data Repository
    Project: NWO | Unravelling the annual cy... (2300189118)

    1. GPS‐tracking devices have been used in combination with a wide range of additional sensors to study animal behaviour, physiology and interaction with their environment. Tri‐axial accelerometers allow researchers to remotely infer the behaviour of individuals, at all places and times. Collection of accelerometer data is relatively cheap in terms of energy usage, but the amount or raw data collected generally requires much storage space and is particularly demanding in terms of energy needed for data transmission. 2. Here we propose compressing the raw ACC data into summary statistics within the tracking device (before transmission) to reduce data size, as a means to overcome limitations in storage and energy capacity. 3. We explored this type of lossy data compression in the accelerometer data of tagged Bewick's swans (Cygnus columbianus bewickii) collected in spring 2017. By using software settings in which bouts of 2 s of both raw ACC data and summary statistics were collected in parallel but with different bout intervals to keep total data size comparable, we created the opportunity for a direct comparison of time budgets derived by the two data collection methods. 4. We found that the data compression in our case yielded a 6 time reduction in data size per bout, and concurrent, similar decreases in storage and energy use of the device. We show that with the same accuracy of the behavioural classification, the freed memory and energy of the device can be used to increase the monitoring effort, resulting in a more detailed representation of the individuals’ time budget. Rare and/or short behaviours such as daily roost flights, were picked up significantly more when collecting summary statistics instead of raw ACC data (but note differences in sampling rate). Such level of detail can be of essential importance, for instance to make a reliable estimate of the energy budgets of individuals. 5. In conclusion, we argue that this type of lossy data compression can be a well‐considered choice in study situations where limitations in energy and storage space of the device pose a problem. Ultimately these developments can allow for long‐term and nearly continuous remote‐monitoring of the behaviour of free‐ranging animals. Nuijten RJM, Gerrits T, Shamoun-Baranes J, Nolet BA (2020) Less is more: on-board lossy compression of accelerometer data increases biologging capacity. Journal of Animal Ecology 89(1): 237-247. doi:10.1111/1365-2656.13164

  • Open Access
    Authors: 
    Middelkamp, Sjors; Heesch, Sebastiaan Van; A. Braat; Ligt, Joep De; Iterson, Maarten Van; Simonis, Marieke; Roosmalen, Markus Van; Kelder, Martijn; Kruisselbrink, Evelien; Hochstenbach, Ron; +7 more
    Publisher: Figshare
    Project: NWO | Solving the genomic jigsa... (2300182042)

    Primer sequences used for each viewpoint in the 4C-seq experiments. Primer sequences are shown without the sequences of the sequencing primer and the P5 and P7 Illumina adaptors. (XLSX 10Â kb)

  • Open Access
    Authors: 
    Hop, Paul J.; Luijk, René; Daxinger, Lucia; Iterson, Maarten Van; Dekkers, Koen F.; Jansen, Rick; Meurs, Joyce B. J. Van; Peter A. C. ’T Hoen; M. Arfan Ikram; Greevenbroek, Marleen M. J. Van; +5 more
    Publisher: figshare
    Project: NWO | BBMRI-NL2.0: The NL-Bioba... (2300184368), NWO | BBMRI-NL (2300154272)

    Additional file 12: Table S12. Transcription factor binding site enrichments, includes the overlap between target CpGs and ChIP-seq peaks for each experiment, the overlap between the background regions and the ChIP-seq peaks, and the enrichment statistics (Fisher’s exact test).

  • Open Access
    Authors: 
    Nakad, Rania; L. Snoek; Wentao Yang; Ellendt, Sunna; Schneider, Franziska; Mohr, Timm; Rösingh, Lone; Masche, Anna; Rosenstiel, Philip; Dierking, Katja; +2 more
    Publisher: Figshare
    Project: NWO | NEMADAPT: Molecular archi... (2300161158), NIH | Caenorhabditis Genetics C... (1P40OD010440-01), NWO | The transcriptional regul... (2300179698)

    Raw data for the analysis of N2, CB4856, and the npr-1 mutants. Sheet 1, Lawn leaving behavior of N2 and CB4856 from Bacillus thuringiensis - Raw data for Fig. 1; sheet 2, Lawn leaving behavior of mutants from Bacillus thuringiensis - Raw data for Fig. 4; sheet 3, Surival of N2 and CB4856 on Bacillus thuringiensis - Raw data for Additional file 9; sheet 4, Surival of mutants on Bacillus thuringiensis - Raw data for Fig. 5; sheet 5, Lawn leaving behavior of N2 and CB4856 from Pseudomonas aeruginosa PA14 - Raw data for Additional file 10; sheet 6, Lawn leaving behavior of mutants from Pseudomonas aeruginosa PA14 - Raw data for Fig. 6; sheet 7, Surival of mutants on Pseudomonas PA14 - Raw data for Fig. 5. (XLS 482 kb)

  • Open Access English
    Authors: 
    Goelzer, Heiko;
    Publisher: Zenodo
    Project: NWO | Perturbations of System E... (2300181601), EC | ICE2ICE (610055), NSF | Collaborative Research: I... (1504230), NWO | Perturbations of System E... (2300181601), EC | ICE2ICE (610055), NSF | Collaborative Research: I... (1504230)

    This archive provides the forcing data and ice sheet model output produced as part of the publication "Design and results of the ice sheet model initialisation experiments initMIP-Greenland: an ISMIP6 intercomparison", published in The Cryosphere, https://www.the-cryosphere.net/12/1433/2018/ Goelzer, H., Nowicki, S., Edwards, T., Beckley, M., Abe-Ouchi, A., Aschwanden, A., Calov, R., Gagliardini, O., Gillet-Chaulet, F., Golledge, N. R., Gregory, J., Greve, R., Humbert, A., Huybrechts, P., Kennedy, J. H., Larour, E., Lipscomb, W. H., Le clec´h, S., Lee, V., Morlighem, M., Pattyn, F., Payne, A. J., Rodehacke, C., Rückamp, M., Saito, F., Schlegel, N., Seroussi, H., Shepherd, A., Sun, S., van de Wal, R., and Ziemen, F. A.: Design and results of the ice sheet model initialisation experiments initMIP-Greenland: an ISMIP6 intercomparison, The Cryosphere, 12, 1433-1460, 2018, doi:10.5194/tc-12-1433-2018. Contact: Heiko Goelzer, h.goelzer@uu.nl Further information on ISMIP6 and initMIP-Greenland can be found here: http://www.climate-cryosphere.org/activities/targeted/ismip6 http://www.climate-cryosphere.org/wiki/index.php?title=InitMIP-Greenland Users should cite the original publication when using all or part of the data. In order to document CMIP6’s scientific impact and enable ongoing support of CMIP, users are also obligated to acknowledge CMIP6, ISMIP6 and the participating modelling groups. *** Important note *** For consistency with future ISMIP6 intercomparison exercises and some observational data sets, we have re-gridded all output to a diagnostic grid following the EPSG:3413 specifications, which differs from the grid originally used to distribute the forcing data. We also provide the forcing data conservatively interpolated to the new grid. Archive overview ---------------- README.txt - this information dSMB.zip - The original surface mass balance anomaly forcing data and description dSMB/ dsmb_01B13_ISMIP6_v2.nc dsmb_05B13_ISMIP6_v2.nc dsmb_10B13_ISMIP6_v2.nc dsmb_20B13_ISMIP6_v2.nc README_dSMB_v2.txt dSMB_epsg3413.zip - The surface mass balance anomaly forcing data and description, interpolated to the new grid on EPSG:3413 dSMB_epsg3413/ dsmb_01e3413_ISMIP6_v2.nc dsmb_05e3413_ISMIP6_v2.nc dsmb_10e3413_ISMIP6_v2.nc dsmb_20e3413_ISMIP6_v2.nc README_dSMB_v2_epsg3413.txt <group>_<model>_<experiment>.zip - The model output per group, model and experiment (init, ctrl, asmb) <group1>_<model1>_init/ acabf_GIS_<group1>_<model1>_init.nc ... <group1>_<model1>_ctrl/ acabf_GIS_<group1>_<model1>_ctrl.nc ... <group1>_<model1>_asmb/ acabf_GIS_<group1>_<model1>_asmb.nc ... <group1>_<model2>_init/ ... <group1>_<model2>_ctrl/ ... <group1>_<model2>_asmb/ ... <group2>_<model1>_init/ ... <group2>_<model1>_ctrl/ ... <group2>_<model1>_asmb/ ... The following script may be used to download the content of the archive. #!/bin/bash wget https://zenodo.org/record/1173088/files/README.txt wget https://zenodo.org/record/1173088/files/dSMB_epsg3413.zip wget https://zenodo.org/record/1173088/files/dSMB.zip for amodel in ARC_PISM AWI_ISSM1 AWI_ISSM2 BGC_BISICLES1 BGC_BISICLES2 BGC_BISICLES3 DMI_PISM1 DMI_PISM2 DMI_PISM3 DMI_PISM4 DMI_PISM5 IGE_ELMER1 IGE_ELMER2 ILTS_SICOPOLIS ILTSPIK_SICOPOLIS IMAU_IMAUICE1 IMAU_IMAUICE2 IMAU_IMAUICE3 JPL_ISSM LANL_CISM LSCE_GRISLI MIROC_ICIES1 MIROC_ICIES2 MPIM_PISM UAF_PISM1 UAF_PISM2 UAF_PISM3 UAF_PISM4 UAF_PISM5 UAF_PISM6 UCIJPL_ISSM ULB_FETISH1 ULB_FETISH2 VUB_GISM1 VUB_GISM2; do wget https://zenodo.org/record/1173088/files/${amodel}_init.zip wget https://zenodo.org/record/1173088/files/${amodel}_ctrl.zip wget https://zenodo.org/record/1173088/files/${amodel}_asmb.zip done {"references": ["Goelzer, H., Nowicki, S., Edwards, T., Beckley, M., Abe-Ouchi, A., Aschwanden, A., Calov, R., Gagliardini, O., Gillet-Chaulet, F., Golledge, N. R., Gregory, J., Greve, R., Humbert, A., Huybrechts, P., Kennedy, J. H., Larour, E., Lipscomb, W. H., Le clec\u00b4h, S., Lee, V., Morlighem, M., Pattyn, F., Payne, A. J., Rodehacke, C., R\u00fcckamp, M., Saito, F., Schlegel, N., Seroussi, H., Shepherd, A., Sun, S., van de Wal, R., and Ziemen, F. A.: Design and results of the ice sheet model initialisation experiments initMIP-Greenland: an ISMIP6 intercomparison, The Cryosphere, 12, 1433-1460, https://doi.org/10.5194/tc-12-1433-2018, 2018.", "Nowicki, S. M. J., Payne, A., Larour, E., Seroussi, H., Goelzer, H., Lipscomb, W., Gregory, J., Abe-Ouchi, A., and Shepherd, A.: Ice Sheet Model Intercomparison Project (ISMIP6) contribution to CMIP6, Geosci. Model Dev., 9, 4521-4545, https://doi.org/10.5194/gmd-9-4521-2016, 2016."]}

  • English
    Authors: 
    Gloaguen, Yann; Jacobs, Wesley; De Bruin, Bas; Lutz, Martin; Van Der Vlugt, Jarl Ivar;
    Publisher: Cambridge Crystallographic Data Centre
    Project: NWO | TAILOR-MADE METAL SPECIES... (2300154636), EC | EURECAT (279097)

    An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures. Related Article: Yann Gloaguen, Wesley Jacobs, Bas de Bruin, Martin Lutz, and Jarl Ivar van der Vlugt|2013|Inorg.Chem.|52|1682|doi:10.1021/ic302301h

  • Open Access
    Authors: 
    Kardol, Paul; Cornips, Nelleke J.; Kempen, Monique M. L. Van; J. M. Tanja Bakx-Schotman; Putten, Wim H. Van Der;
    Publisher: Wiley
    Project: NWO | Soil ecosystem functionin... (1700113432)

    Available nutrients in the sterilized soil and in the microbial inocula originating from soil in which monocultures of early-successional plant species were grown in experiment 1.

  • Open Access
    Authors: 
    Kardol, Paul; Cornips, Nelleke J.; Kempen, Monique M. L. Van; J. M. Tanja Bakx-Schotman; Putten, Wim H. Van Der;
    Publisher: Wiley
    Project: NWO | Soil ecosystem functionin... (1700113432)

    Abiotic soil characteristics at the start of the feedback experiment.

  • Open Access
    Authors: 
    Gervin, Kristina; Salas, Lucas; Bakulski, Kelly; Zelm, Menno; Koestler, Devin; Wiencke, John; Duijts, Liesbeth; HenriĂŤtte Moll; Kelsey, Karl; Kobor, Michael; +4 more
    Publisher: figshare
    Project: NIH | (PQ3) Immune epigenetic b... (5R01CA216265-02), NIH | Exposure Assessment Core (5P30ES017885-04), NIH | Prenatal exposure to meta... (1R01ES025531-01A1), EC | DYNAHEALTH (633595), NIH | Folic Acid Prevention Pat... (5R01ES025574-03), NIH | Racial inequalities in he... (1R01MD013299-01), EC | LIFECYCLE (733206), EC | ERA-HDHL (696295), NWO | NCHA Subsidiebesluit 2008... (2300155116), EC | DrugsInPregnancy (639377),...

    Table S2. pickCompProbes reference library probes using raw de Goede reference. (XLSX 36 kb)

  • Open Access
    Authors: 
    Vries, Ronald De; Riley, Robert; Wiebenga, Ad; Aguilar-Osorio, Guillermo; Sotiris Amillis; Cristiane Uchima; Anderluh, Gregor; Asadollahi, Mojtaba; Askin, Marion; Barry, Kerrie; +107 more
    Publisher: Figshare
    Project: NWO | Harvesting nature?s bount... (2300175783), SFI | Roles of histone demethyl... (13/CDA/2142)

    CAZy comparison of the species. (XLSX 30 kb)

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