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CoreSlicer
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2019 Python Publisher:bio.toolsFunded by:CIHR
CIHR
Authors: Mullie, Louis;
Enables extraction of morphomic markers from CT images by non-technically skilled clinicians.
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bio.tools
Software . 2019
License: MIT
Data sources: bio.tools
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bio.tools
Software . 2019
License: MIT
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PopNetD3
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2019 JavaScript Publisher:bio.toolsFunded by:CIHR, NSERC
CIHR ,
NSERC
Authors: Parkinson, John;
Network-Based Web Resource for Exploring Population Structure.
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bio.tools
Software . 2019
License: Unlicense
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bio.tools
Software . 2019
License: Unlicense
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PFOND
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2019 JavaScript Publisher:bio.toolsFunded by:CIHR
CIHR
Authors: Lab, Wasserman;
Portal for Families Overcoming Neurodevelopmental Disorders (PFOND) provides a structured web interface for the information sharing with individuals struggling with the consequences of rare developmental disorders.
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bio.tools
Software . 2019
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bio.tools
Software . 2019
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Fetal XCMR
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2019 MATLAB Publisher:bio.toolsFunded by:CIHR
CIHR
Authors: Macgowan, Christopher K.; Roy, Chris;
Numerical phantom for fetal cardiovascular magnetic resonance imaging.
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bio.tools
Software . 2019
License: Unlicense
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bio.tools
Software . 2019
License: Unlicense
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Echo-SyncNet
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2021 Python Publisher:bio.toolsFunded by:NSERC, CIHR
NSERC ,
CIHR
Authors: Tsang, Teresa;
Echo-SyncNet is a tool for self-supervised cardiac view synchronization in echocardiography (ECG). Echo-SyncNet is an encoder style CNN trained to produced low dimensional and feature-rich embedding sequences cardiac ultrasound videos.
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bio.tools
Software . 2021
License: MIT
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bio.tools
Software . 2021
License: MIT
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gpart
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2019 R Publisher:bio.toolsFunded by:CIHR
CIHR
Authors: Kim, Sun Ah;
Human genome partitioning and visualization of high-density SNP data by identifying haplotype blocks.
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bio.tools
Software . 2019
License: MIT
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bio.tools
Software . 2019
License: MIT
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GENLIB
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2018 R Publisher:bio.toolsFunded by:CIHR
CIHR
Authors: Gauvin, Héloïse;
GENLIB is an R package that can be used to analyze genealogical data.
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bio.tools
Software . 2018
License: GPL-3.0
Data sources: bio.tools
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bio.tools
Software . 2018
License: GPL-3.0
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ActiveDriver
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2019 R Publisher:bio.toolsFunded by:NIH | Resource for Analysis, Vi..., CIHR
NIH| Resource for Analysis, Vizualization, and Integration of Networks (RAVIN) ,
CIHR
Authors: Reimand, Jüri;
ActiveDriver is a computational method for identifying post-translational modification (PTM) sites (i.e., active sites) in proteins that are significantly mutated in cancer genomes. ActiveDriver provides signalling-related interpretation of single nucleotide variants (SNVs) identified in cancer genome sequencing.
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bio.tools
Software . 2019
License: GPL-3.0
Data sources: bio.tools
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bio.tools
Software . 2019
License: GPL-3.0
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1000Genomes
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2017Publisher:bio.toolsFunded by:WT | 1000 genomes project data..., NIH | Robust Software Tools for..., NIH | Discovery and analysis of... +41 projects
WT| 1000 genomes project data analysis. ,
NIH| Robust Software Tools for Variant Identification and Functional Assessment ,
NIH| Discovery and analysis of structural variation in whole genome sequences ,
NIH| Improving genotype accuracy and haplotypic analysis for genome-wide studies ,
NIH| Pulmonary Genetic Medicine Training Program ,
UKRI| Imputation-based statistical methods for genetic studies of human complex disease ,
NIH| Quality Control Genotype Calling and Study Design for 1000 Genomes Project ,
NIH| Filling the data processing gap for exon-region specific data from 1000 Genomes ,
WT| Statistical methods development and analysis of genomic data in health and disease. ,
NIH| Sequence and Assembly of Segmental Duplications ,
CIHR ,
NIH| Lost-of-function variants in the 1000 genomes data set and implications to GWAS ,
NIH| Population Structure Admixture and Selection across the 1000 Genomes Data Set ,
NIH| Genome-Wide Association Studies of Asthma in Populations of African Descent ,
WT| Understanding the genetic basis of common human diseases: core funding for the Wellcome Trust Centre for Human Genetics. ,
EC| HIGEN ,
NIH| Improved gene mapping for whole genome data ,
NIH| Population genetics and evolution of mobile elements ,
UKRI| An integrated variant calling pipeline for third-generation sequencing technologies ,
NIH| Improving the Human Reference Genome Resource ,
NIH| Modular Software for Sequence Data Quality Checking Alignment &Variant-Calling ,
EC| IAGVDHTS ,
NIH| Powerful Simulation Tools for the Genomics Age ,
NIH| VAAST+: Tool for variant prioritization, risk assessment and disease-gene finding ,
NIH| Natural genetic variation in the human genome ,
NIH| Analysis of rare variants & population structure ,
UKRI| The genetics of human physical appearance ,
WT| The Genetic Analysis of Populations. ,
NIH| An Integrative Analysis of Structural Variation for the 1000 Genomes Project ,
NIH| New Approaches for Empowering Studies of Asthma in Populations of African Descent ,
UKRI| RootDetect: Remote Detection and Precision Management of Root Health ,
NIH| Large Scale Sequencing and Analysis of Genomes ,
NIH| Detecting Natural Selection for the 1000 Genomes Dataset ,
NIH| Genomes and Genetics at the BCM-HGSC ,
NIH| Large Scale Genome Sequencing ,
NIH| Genetics and Developmental Biology Training Program ,
NIH| Characterizing the Global Architecture of Genomic Diversity ,
NIH| Natural mutagenesis of human genomes by endogenous retrotransposons ,
NIH| Host and Pathogen Evolution in Lassa Fever ,
NWO| EV Diagnostics for monitoring therapy byliquid tuneable Coulter flowcytometry (project 3.2) ,
WT| Resource centre for genomic epidemiology of malaria. ,
NSF| Graduate Research Fellowship Program ,
NIH| Multi-allelic copy number variation of the human genome ,
NIH| Delineating Heterogeneous Structural Complexity in Cancer Genomes
Authors: Auton A;
The 1000 Genomes Project ran between 2008 and 2015, creating a deep catalogue of human genetic variation. The International Genome Sample Resource (IGSR) was set up to ensure the future usability and accessibility of this data.
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bio.tools
Software . 2017
Data sources: bio.tools
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bio.tools
Software . 2017
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ddpcr
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2018 R Publisher:bio.toolsFunded by:CIHR
CIHR
Authors: Bryan, Jennifer;
ddpcr is a R package for droplet digital polymerase chain reaction visualization and analysis.
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bio.tools
Software . 2018
License: MIT
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bio.tools
Software . 2018
License: MIT
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24 Research products

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CoreSlicer
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2019 Python Publisher:bio.toolsFunded by:CIHR
CIHR
Authors: Mullie, Louis;
Enables extraction of morphomic markers from CT images by non-technically skilled clinicians.
bio.toolsarrow_drop_down
bio.tools
Software . 2019
License: MIT
Data sources: bio.tools
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bio.tools
Software . 2019
License: MIT
Data sources: bio.tools
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PopNetD3
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2019 JavaScript Publisher:bio.toolsFunded by:CIHR, NSERC
CIHR ,
NSERC
Authors: Parkinson, John;
Network-Based Web Resource for Exploring Population Structure.
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bio.tools
Software . 2019
License: Unlicense
Data sources: bio.tools
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bio.tools
Software . 2019
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PFOND
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2019 JavaScript Publisher:bio.toolsFunded by:CIHR
CIHR
Authors: Lab, Wasserman;
Portal for Families Overcoming Neurodevelopmental Disorders (PFOND) provides a structured web interface for the information sharing with individuals struggling with the consequences of rare developmental disorders.
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bio.tools
Software . 2019
Data sources: bio.tools
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bio.tools
Software . 2019
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Fetal XCMR
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2019 MATLAB Publisher:bio.toolsFunded by:CIHR
CIHR
Authors: Macgowan, Christopher K.; Roy, Chris;
Numerical phantom for fetal cardiovascular magnetic resonance imaging.
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bio.tools
Software . 2019
License: Unlicense
Data sources: bio.tools
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bio.tools
Software . 2019
License: Unlicense
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Echo-SyncNet
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2021 Python Publisher:bio.toolsFunded by:NSERC, CIHR
NSERC ,
CIHR
Authors: Tsang, Teresa;
Echo-SyncNet is a tool for self-supervised cardiac view synchronization in echocardiography (ECG). Echo-SyncNet is an encoder style CNN trained to produced low dimensional and feature-rich embedding sequences cardiac ultrasound videos.
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bio.tools
Software . 2021
License: MIT
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integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2019 R Publisher:bio.toolsFunded by:CIHR
CIHR
Authors: Kim, Sun Ah;
Human genome partitioning and visualization of high-density SNP data by identifying haplotype blocks.
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GENLIB
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2018 R Publisher:bio.toolsFunded by:CIHR
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Authors: Gauvin, Héloïse;
GENLIB is an R package that can be used to analyze genealogical data.
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