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Scripts used by Perun to (de)provision services with authorization data

This release is specifically created to document the version of PyOP2 used in a particular set of experiments using Firedrake. Please do not cite this as a general source for Firedrake or any of its dependencies. Instead, refer to https://www.firedrakeproject.org/citing.html

UPDATE no tests ef5646b UPDATE publish / no tests e7e7683 UPDATE index 8708477 UPDATE repo - merged to Bodylight.js-Components 9a59ca3 Merge pull request #29 from creative-connections/dependabot/npm_and_yarn/src_aurelia-bodylight-plugin/decode-uri-component-0.2.2 c2ee133 Merge branch 'master' of github.com:creative-connections/Bodylight.js-Components 737cfad UPDATE dependencies 34f2994 Bump decode-uri-component in /src_aurelia-bodylight-plugin 9735547 Merge pull request #30 from creative-connections/dependabot/npm_and_yarn/src_aurelia-bodylight-plugin/json5-2.2.3 b8d9957 Bump json5 from 2.2.1 to 2.2.3 in /src_aurelia-bodylight-plugin 189e8c5 Merge pull request #31 from creative-connections/dependabot/npm_and_yarn/src_aurelia-bodylight-plugin/jsdom-and-aurelia-pal-nodejs-19.0.0 c2c73d5 Merge pull request #32 from creative-connections/dependabot/npm_and_yarn/dns-packet-5.4.0 682689d MERGE package-lock 0c3675d Merge branch 'master' of github.com:creative-connections/Bodylight.js-Components ffb3057 UPDATE npm packages audit fix c631f42 Merge pull request #25 from creative-connections/dependabot/npm_and_yarn/json5-1.0.2 c2b5394 Merge pull request #24 from creative-connections/dependabot/npm_and_yarn/decode-uri-component-0.2.2 3f7470a Merge pull request #23 from creative-connections/dependabot/npm_and_yarn/loader-utils-1.4.2 2288559 Merge pull request #20 from creative-connections/dependabot/npm_and_yarn/ejs-and-webpack-bundle-analyzer--removed 5643007 Bump dns-packet from 5.3.1 to 5.4.0 f213db3 Bump jsdom and aurelia-pal-nodejs in /src_aurelia-bodylight-plugin 8ceee09 Bump ejs and webpack-bundle-analyzer 370c692 Bump json5 from 1.0.1 to 1.0.2 eb88077 Bump decode-uri-component from 0.2.0 to 0.2.2 d9ac851 Bump loader-utils from 1.4.0 to 1.4.2 d73d78b https://github.com/creative-connections/Bodylight.js-Component/compare/v2.2.1...v2.2.2

Changed Updated MUNI template Updated sample configuration template file Updated proxy.* properties to full paths Refactored valuseAs...() methods in PerunAttribute to return empty collections rather than null objects ### Fixed Fixed another bug in resource capabilities - wrong prefixing - configuration changes needed! ### Added Added property to specify SAML URL - used as path to CSS files from Proxy

ChainRules v1.23.0 Diff since v1.22.0 Merged pull requests: Use logten and logtwo from IrrationalConstants (#555) (@devmotion)

This compressed file contains the scripts used to generate the main output tables in the article 'A trans locus causes a ribosomopathy in hypertrophic hearts that affects mRNA translation in a protein length-dependent fashion' by Franziska Witte, Jorge Ruiz-Orera et al., provisionally accepted for publication in Genome Biology (2021). These scripts can be used to map RNA-seq and Ribo-seq datasets, and use these mapped files to predict QTLs and estimate heritability, as well as to call different categories of translated ORFs. With the generated output, we generated all Figures and Results. For the rest of methods, the used public software and parameters are described in the Methods section. Code can be also accessed from: https://github.com/jorruior/witte_et_al_2021

Release candidate 2 of supporting code for paper * Jan Blechta, Josef Málek, and Martin Vohralík. *Localization of the $W^{-1,q}$ norm for local a posteriori efficiency.* In preparation, 2016.

PyBIDS is a Python library to centralize interactions with datasets conforming BIDS (Brain Imaging Data Structure) format. For more information about BIDS visit bids.neuroimaging.io.

7.3.0 (2022-03-18) Features Custom AttributeMap filter (903bd6f)

This is an artefact for the paper "Boolean Network Sketches: A Unifying Framework for Logical Model Inference". It contains the repository with source code, benchmark models and data, as well as instructions on how to reproduce the experiments presented in the paper. For further instructions, follow the README.md file attached as part of the repository.