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48 research outcomes, page 1 of 5
  • publication . Report . 2016
    Open Access
    Authors:
    Winn, Martyn; Patwardhan, Ardan; Agnel Praveen, Joseph; Lagerstedt, Ingvar;
    Persistent Identifiers
    Project: EC | BIOMEDBRIDGES (284209)

    We have developed a software pipeline, named SMaSB, to perform automated volume/shape matching. Together with a database of over 1000 volumes from the Electron Microscopy Data Bank (EMDB) and Protein Data Bank (PDB), the pipeline underpins a web service PDBeShape. These...

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  • publication . Report . 2016
    Open Access
    Authors:
    Merino, Roxana; Amatya, Suyesh; Jimenez, Rafael; Villaveces, José; Swertz, Morris; Roos, Marco; Litton, Jan-Eric; Holub, Petr; Brunak, Søren; Sarkans, Ugis;
    Persistent Identifiers
    Project: EC | BIOMEDBRIDGES (284209)

    This deliverable finalizes the work on linking biological sample-related information across data infrastructures, data availability levels and information types. A federated system for sample discovery across biobanks is described, and we also report on the latest work ...

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  • publication . Report . 2015
    Open Access
    Authors:
    Hancocks, Tom; Brooksbank, Cath;
    Persistent Identifiers
    Project: EC | BIOMEDBRIDGES (284209)

    BioMedBridges - d12.4 - Report of user training performed in months 36-48

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  • publication . Report . 2014
    Open Access
    Authors:
    Brooksbank, Cath; Alfarez, Deborah;
    Persistent Identifiers
    Project: EC | BIOMEDBRIDGES (284209)

    The success of BioMedBridges will depend on outreach and inreach to diverse groups of stakeholders. This deliverable report describes the use of a survey to define the broad stakeholder groups with whom BioMedBridges needs to engage, and to collect information on how th...

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  • publication . Report . 2019
    Open Access
    Authors:
    Groep, David L.; Neilson, Ian;
    Publisher: Zenodo
    Project: EC | AARC2 (730941)

    With a wide range of identity assurance frameworks to choose from, the most appropriate choice of assurance profile for a use case (one that meets both the risk assessment and the social and community context in which the assurance is needed) may be viewed as confusing....

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  • publication . Report . 2015
    Open Access
    Authors:
    Birney, Ewan; Braasch, Benjamin; Chambers, Jon; Ison, Jon; Karakoyun, Töresin; McMurry, Julie; Overington, John; Parkinson, Helen; Klein, Stefan; Vast, Erwin; ...
    Persistent Identifiers
    Project: EC | BIOMEDBRIDGES (284209)

    This deliverable consists of five pilot studies which integrate and visualise data from across the BioMedBridges domains and the biomedical sciences research infrastructures involved. It builds on the previous WP deliverables and activities (D4.1 to D4.4). The pilots de...

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  • publication . Report . 2015
    Open Access
    Authors:
    Geddes, Neil; Chevers, John; Jones, Bob; Koski, Kimmo; Newhouse, Steven; Sipos;
    Persistent Identifiers
    Project: EC | BIOMEDBRIDGES (284209)

    This report presents a status and progress report on current developments in the ICT e-infrastructures relevant to the biomedical research infrastructures participating in the BioMedBridges project and includes a number of observations and recommendations from the proje...

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  • publication . Report . 2019
    Open Access English
    Authors:
    Hardt, Marcus; Liampotis, Nicolas; Stevanovic, Uros; Salle, Mischa; Kanellopoulos Christos; Jensen, Jens; Memon, Shiraz; Groep, David; Linden, Mikael; Paetow, Stefan;
    Persistent Identifiers
    Publisher: Karlsruhe
    Project: EC | AARC2 (730941)

    The AARC Blueprint Architecture (BPA) provides a set of building blocks for software architects and technical decision makers who are designing and implementing access management solutions for international research collaborations. This document describes the evolution ...

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  • publication . Report . 2016
    Open Access
    Authors:
    Rustici, Gabriella; Jupp, Simon; Ninkovic, Tanja; Gormanns, Philipp; Heriche, Jean-Karim; Lundin, Johan; Neff, Frauke; Ellenberg, Jan;
    Persistent Identifiers
    Project: EC | BIOMEDBRIDGES (284209)

    The imaging use-case addresses interoperability of large-scale image data sets, which is required for reusing and comparatively analyzing data sets generated by different sources. Cellular phenotypes are good reporters of underlying cellular processes. This observation ...

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  • publication . Report . 2015
    Open Access
    Authors:
    Suhr, Stephanie; Cochrane, Guy; Stanford, Natalie J.; Boiten, Jan-Willem; Swedlow, Jason; Morris, Chris; Jimenez, Rafael; Neerincx, Pieter;
    Persistent Identifiers
    Project: EC | BIOMEDBRIDGES (284209)

    This BioMedBridges knowledge exchange workshop, held on 15-16 May in Hinxton and hosted by ELIXIR, provided a forum for the biomedical sciences research infrastructures (BMS RIs) to discuss their possible future service requirements with e‐infrastructure providers inclu...

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48 research outcomes, page 1 of 5